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Aliases for MIR3198-1 Gene

Subcategory (RNA class) for MIR3198-1 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3198-1 Gene

  • MicroRNA 3198-1 2 3 5
  • MicroRNA 3198 2 3
  • Hsa-Mir-3198-1 3
  • Hsa-Mir-3198 3
  • Mir-3198-1 3
  • MIR3198 3

External Ids for MIR3198-1 Gene

Previous HGNC Symbols for MIR3198-1 Gene

  • MIR3198

Previous GeneCards Identifiers for MIR3198-1 Gene

  • GC22M018247

Summaries for MIR3198-1 Gene

Entrez Gene Summary for MIR3198-1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3198-1 Gene

MIR3198-1 (MicroRNA 3198-1) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3198-1 Gene

Genomics for MIR3198-1 Gene

Regulatory Elements for MIR3198-1 Gene

Enhancers for MIR3198-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G017759 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +3.5 3500 1.6 SOX13 FOXA2 ZFP64 ZNF384 YY1 FOSL1 CREM ZBTB20 SOX5 GATAD2A BID CECR2 BCL2L13 USP18 MIR3198-1 PIR31207
GH22G017763 0.9 Ensembl ENCODE dbSUPER 0.7 +0.4 410 1.1 HNF4A MIR3198-1 PIR31207
GH22G017761 0.5 dbSUPER 0.7 +2.3 2251 0.6 FOXA2 FOXA3 CEBPA YY1 MIR3198-1 PIR31207
GH22G017741 1 ENCODE dbSUPER 0.3 +21.9 21858 0.8 CTCF TFAP4 ZNF654 RB1 BHLHE40 TRIM22 REST RAD21 RELA JUND BID PIR31207 MIR3198-1
GH22G017733 0.7 ENCODE dbSUPER 0.3 +29.6 29635 2.5 MNT HNF4A FOS BID ENSG00000093100 MICAL3 BCL2L13 PIR31207 MIR3198-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3198-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3198-1 Gene

Chromosome:
22
Start:
17,764,180 bp from pter
End:
17,764,259 bp from pter
Size:
80 bases
Orientation:
Minus strand

Genomic View for MIR3198-1 Gene

Genes around MIR3198-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3198-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3198-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3198-1 Gene

Proteins for MIR3198-1 Gene

Post-translational modifications for MIR3198-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3198-1 Gene

Domains & Families for MIR3198-1 Gene

Gene Families for MIR3198-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3198-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3198-1 Gene

Function for MIR3198-1 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3198-1 Gene

Localization for MIR3198-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3198-1 Gene

Pathways & Interactions for MIR3198-1 Gene

SuperPathways for MIR3198-1 Gene

No Data Available

Interacting Proteins for MIR3198-1 Gene

Gene Ontology (GO) - Biological Process for MIR3198-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3198-1 Gene

Drugs & Compounds for MIR3198-1 Gene

No Compound Related Data Available

Transcripts for MIR3198-1 Gene

mRNA/cDNA for MIR3198-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3198-1 Gene

No ASD Table

Relevant External Links for MIR3198-1 Gene

GeneLoc Exon Structure for
MIR3198-1
ECgene alternative splicing isoforms for
MIR3198-1

Expression for MIR3198-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3198-1 Gene

genes like me logo Genes that share expression patterns with MIR3198-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3198-1 Gene

Orthologs for MIR3198-1 Gene

Evolution for MIR3198-1 Gene

ENSEMBL:
Gene Tree for MIR3198-1 (if available)
TreeFam:
Gene Tree for MIR3198-1 (if available)

No data available for Orthologs for MIR3198-1 Gene

Paralogs for MIR3198-1 Gene

No data available for Paralogs for MIR3198-1 Gene

Variants for MIR3198-1 Gene

Sequence variations from dbSNP and Humsavar for MIR3198-1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000025988 -- 17,765,441(+) CGATA(A/T)CCAAA intron-variant, upstream-variant-2KB
rs1004993759 -- 17,764,610(+) TTCCA(A/G)TGTAG intron-variant, upstream-variant-2KB
rs1008319057 -- 17,764,686(+) AGAGG(A/C)CCGGG intron-variant, upstream-variant-2KB
rs1012183918 -- 17,765,809(+) ATGTA(C/T)CCTAA intron-variant, upstream-variant-2KB
rs1013187591 -- 17,764,121(+) GGAAG(C/T)GGTGG intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for MIR3198-1 Gene

Variant ID Type Subtype PubMed ID
esv3893428 CNV loss 25118596
nsv428385 CNV gain+loss 18775914
nsv526826 CNV gain 19592680
nsv834119 CNV loss 17160897
nsv834120 CNV loss 17160897
nsv979630 CNV duplication 23825009

Relevant External Links for MIR3198-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3198-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3198-1 Gene

Disorders for MIR3198-1 Gene

Relevant External Links for MIR3198-1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3198-1

No disorders were found for MIR3198-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3198-1 Gene

Publications for MIR3198-1 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  3. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3 64
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3198-1 Gene

Sources for MIR3198-1 Gene

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