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Aliases for MIR3196 Gene

Subcategory (RNA class) for MIR3196 Gene


Quality Score for this RNA gene is


Aliases for MIR3196 Gene

  • MicroRNA 3196 2 3 5
  • Hsa-Mir-3196 3
  • Mir-3196 3

External Ids for MIR3196 Gene

Previous GeneCards Identifiers for MIR3196 Gene

  • GC20U900576
  • GC20P061871

Summaries for MIR3196 Gene

Entrez Gene Summary for MIR3196 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3196 Gene

MIR3196 (MicroRNA 3196) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3196 Gene

Genomics for MIR3196 Gene

Regulatory Elements for MIR3196 Gene

Enhancers for MIR3196 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F063238 1.3 Ensembl ENCODE 0.8 -0.1 -103 1.2 CTCF KLF1 PKNOX1 USF1 SAP130 MLX MAX RAD21 ZIC2 HIC1 BIRC7 ARFGAP1 MIR3196
GH20F063237 0.6 Ensembl 0.8 -1.7 -1679 0.2 BIRC7 NKAIN4 MIR3196
GH20F063246 0.4 ENCODE 0.4 +8.2 8245 0.2 CTCF RAD51 USF1 ZNF600 NKAIN4 BIRC7 ARFGAP1 COL20A1 RNU6-994P GC20P063249 MIR3196
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR3196 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3196 Gene

63,238,779 bp from pter
63,238,842 bp from pter
64 bases
Plus strand

Genomic View for MIR3196 Gene

Genes around MIR3196 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3196 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3196 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3196 Gene

Proteins for MIR3196 Gene

Post-translational modifications for MIR3196 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3196 Gene

Domains & Families for MIR3196 Gene

Gene Families for MIR3196 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3196: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3196 Gene

Function for MIR3196 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3196 Gene

Localization for MIR3196 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3196 Gene

Pathways & Interactions for MIR3196 Gene

SuperPathways for MIR3196 Gene

No Data Available

Interacting Proteins for MIR3196 Gene

Gene Ontology (GO) - Biological Process for MIR3196 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR3196 Gene

Transcripts for MIR3196 Gene

mRNA/cDNA for MIR3196 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3196 Gene

No ASD Table

Relevant External Links for MIR3196 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR3196 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3196 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3196 Gene

Orthologs for MIR3196 Gene

Evolution for MIR3196 Gene

Gene Tree for MIR3196 (if available)
Gene Tree for MIR3196 (if available)

No data available for Orthologs for MIR3196 Gene

Paralogs for MIR3196 Gene

No data available for Paralogs for MIR3196 Gene

Variants for MIR3196 Gene

Sequence variations from dbSNP and Humsavar for MIR3196 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1075556 -- 63,239,282(-) GTCCC(C/T)CAGCC intron-variant, downstream-variant-500B
rs1075557 -- 63,239,113(-) AAAGC(C/T)GGGCC intron-variant, downstream-variant-500B
rs112863575 -- 63,238,441(+) CACAG(C/T)GTGCA upstream-variant-2KB, reference, synonymous-codon
rs113297757 -- 63,238,789(+) GGGGC(A/G)GGGCG intron-variant, nc-transcript-variant
rs113849525 -- 63,238,226(+) GGGAC(C/T)ACCCT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3196 Gene

Variant ID Type Subtype PubMed ID
dgv519n27 CNV loss 19166990
dgv520n27 CNV loss 19166990
dgv7664n54 CNV loss 21841781
dgv7665n54 CNV loss 21841781
esv3893360 CNV loss 25118596
nsv3446 CNV deletion 18451855
nsv470560 CNV loss 18288195
nsv517648 CNV loss 19592680
nsv518905 CNV loss 19592680
nsv525279 CNV loss 19592680
nsv586559 CNV gain 21841781
nsv586562 CNV gain 21841781
nsv586563 CNV loss 21841781
nsv819591 CNV gain 19587683
nsv820146 CNV gain 19587683
nsv834031 CNV loss 17160897
nsv834032 CNV loss 17160897
nsv953306 CNV deletion 24416366
nsv9825 CNV gain 18304495

Relevant External Links for MIR3196 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3196 Gene

Disorders for MIR3196 Gene

Relevant External Links for MIR3196

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR3196 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3196 Gene

Publications for MIR3196 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3196 Gene

Sources for MIR3196 Gene

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