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Aliases for MIR3193 Gene

Subcategory (RNA class) for MIR3193 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3193 Gene

  • MicroRNA 3193 2 3 5
  • Hsa-Mir-3193 3

External Ids for MIR3193 Gene

Previous GeneCards Identifiers for MIR3193 Gene

  • GC20U900591
  • GC20P030194

Summaries for MIR3193 Gene

Entrez Gene Summary for MIR3193 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3193 Gene

MIR3193 (MicroRNA 3193) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3193 Gene

Genomics for MIR3193 Gene

Regulatory Elements for MIR3193 Gene

Enhancers for MIR3193 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G031601 2.3 VISTA FANTOM5 ENCODE dbSUPER 0.7 +0.3 266 11.5 MLX CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MYLK2 COX4I2 TSPY26P HM13 RNU6-384P HM13-AS1 MCTS2P PDRG1 ID1 LOC149935
GH20G031622 1.3 Ensembl ENCODE dbSUPER 0.4 +15.6 15558 1.3 ELF3 FOXA2 ATF1 THRB ZSCAN9 RARA CREM MIXL1 PPARG KAT8 HM13 COX4I2 MIR3193
GH20G031616 1 Ensembl ENCODE dbSUPER 0.4 +10.4 10381 1.6 CEBPA ZNF384 SPI1 MIR3193 COX4I2
GH20G031633 0.9 ENCODE dbSUPER 0.3 +26.3 26331 0.7 HDAC1 MTA2 UBTF DPF2 ZNF592 ARID1B HDAC2 EGR1 SMARCA4 GATA2 HM13 COX4I2 MIR3193
GH20G031634 0.8 ENCODE 0.3 +27.2 27237 0.2 HDAC1 ARID4B RAD21 ZNF143 CREM DEK THAP11 ZNF654 ZBTB2 MXD4 HM13 COX4I2 MIR3193
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3193 on UCSC Golden Path with GeneCards custom track

Promoters for MIR3193 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000136011 -1586 2801 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC SSRP1 GLIS1

Genomic Location for MIR3193 Gene

Chromosome:
20
Start:
31,607,186 bp from pter
End:
31,607,240 bp from pter
Size:
55 bases
Orientation:
Plus strand

Genomic View for MIR3193 Gene

Genes around MIR3193 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3193 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3193 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3193 Gene

Proteins for MIR3193 Gene

Post-translational modifications for MIR3193 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3193 Gene

Domains & Families for MIR3193 Gene

Gene Families for MIR3193 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3193: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3193 Gene

Function for MIR3193 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3193 Gene

Localization for MIR3193 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3193 Gene

Pathways & Interactions for MIR3193 Gene

SuperPathways for MIR3193 Gene

No Data Available

Interacting Proteins for MIR3193 Gene

Gene Ontology (GO) - Biological Process for MIR3193 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3193 Gene

Drugs & Compounds for MIR3193 Gene

No Compound Related Data Available

Transcripts for MIR3193 Gene

mRNA/cDNA for MIR3193 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3193 Gene

No ASD Table

Relevant External Links for MIR3193 Gene

GeneLoc Exon Structure for
MIR3193
ECgene alternative splicing isoforms for
MIR3193

Expression for MIR3193 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3193 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3193 Gene:

MIR3193
genes like me logo Genes that share expression patterns with MIR3193: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3193 Gene

Orthologs for MIR3193 Gene

Evolution for MIR3193 Gene

ENSEMBL:
Gene Tree for MIR3193 (if available)
TreeFam:
Gene Tree for MIR3193 (if available)

No data available for Orthologs for MIR3193 Gene

Paralogs for MIR3193 Gene

No data available for Paralogs for MIR3193 Gene

Variants for MIR3193 Gene

Sequence variations from dbSNP and Humsavar for MIR3193 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000081086 -- 31,607,090(+) CACAG(C/G)TGCCG upstream-variant-2KB
rs1000147063 -- 31,606,366(+) ATTTT(A/T)AAAAA upstream-variant-2KB, utr-variant-3-prime
rs1000215198 -- 31,605,492(+) TGTCT(C/G)TCTGA upstream-variant-2KB, reference, synonymous-codon
rs1002226519 -- 31,606,951(+) TGTGA(A/G)AGGCA downstream-variant-500B, upstream-variant-2KB
rs1002495331 -- 31,606,816(+) CAGGG(C/T)CCCCT downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3193 Gene

Variant ID Type Subtype PubMed ID
dgv4300n100 CNV gain 25217958
esv2763228 CNV gain 21179565
esv3645655 CNV loss 21293372
nsv458961 CNV gain 19166990
nsv470546 CNV gain 18288195
nsv585911 CNV gain 21841781

Relevant External Links for MIR3193 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3193

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3193 Gene

Disorders for MIR3193 Gene

Relevant External Links for MIR3193

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3193

No disorders were found for MIR3193 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3193 Gene

Publications for MIR3193 Gene

  1. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3193 Gene

Sources for MIR3193 Gene

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