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Aliases for MIR3190 Gene

Subcategory (RNA class) for MIR3190 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3190 Gene

  • MicroRNA 3190 2 3 5
  • Hsa-Mir-3190 3
  • Mir-3190 3

External Ids for MIR3190 Gene

Previous GeneCards Identifiers for MIR3190 Gene

  • GC19U901359
  • GC19P047730

Summaries for MIR3190 Gene

Entrez Gene Summary for MIR3190 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3190 Gene

MIR3190 (MicroRNA 3190) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3190 Gene

Genomics for MIR3190 Gene

Regulatory Elements for MIR3190 Gene

Enhancers for MIR3190 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G047209 1.6 Ensembl ENCODE dbSUPER 0.4 -16.5 -16537 2.6 HDGF PKNOX1 MLX CREB3L1 ARID4B SIN3A ZNF766 ZNF143 KLF13 ZNF263 ZC3H4 BICRA ENSG00000268810 BBC3 CCDC9 NOP53-AS1 SAE1 PPP5D1 TMEM160 PRKD2
GH19G047185 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -38.2 -38235 6.1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 YBX1 ZNF143 FOS ZNF263 SP5 SAE1 BBC3 ZC3H4 BICRA CCDC9 MIR3190
GH19G047181 1.3 Ensembl ENCODE dbSUPER 0.3 -44.4 -44411 1.2 ESRRA ZSCAN4 ZNF175 ZNF644 POLR2A NR2F6 ZNF639 SMARCE1 RFX1 ZNF362 MIR3190 ZC3H4
GH19G047154 1.4 Ensembl ENCODE dbSUPER 0.2 -69.5 -69540 5.6 PKNOX1 FOXA2 YY1 ZNF121 FOS SP5 TBX21 SREBF1 ZNF579 PBX2 BBC3 CCDC9 SAE1 TMEM160 ZC3H4 MIR3190
GH19G047175 1.2 Ensembl ENCODE dbSUPER 0.2 -50.0 -50017 3.7 ZNF362 JUN BHLHE40 MAX NR2F2 ZKSCAN1 ZNF664 POLR2A GATA2 ZBTB33 SAE1 MIR3190 ZC3H4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3190 on UCSC Golden Path with GeneCards custom track

Promoters for MIR3190 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000288746 -542 801 HDGF HNRNPUL1 PKNOX1 ARNT AGO1 ZFP64 ARID4B SIN3A ZNF2 ZBTB7B
ENSR00000110520 1058 1601 MLX AGO1 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 TBX21 ZFP41

Genomic Location for MIR3190 Gene

Chromosome:
19
Start:
47,226,942 bp from pter
End:
47,227,021 bp from pter
Size:
80 bases
Orientation:
Plus strand

Genomic View for MIR3190 Gene

Genes around MIR3190 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3190 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3190 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3190 Gene

Proteins for MIR3190 Gene

Post-translational modifications for MIR3190 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3190 Gene

Domains & Families for MIR3190 Gene

Gene Families for MIR3190 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3190: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3190 Gene

Function for MIR3190 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3190 Gene

Localization for MIR3190 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3190 Gene

Pathways & Interactions for MIR3190 Gene

SuperPathways for MIR3190 Gene

No Data Available

Interacting Proteins for MIR3190 Gene

Gene Ontology (GO) - Biological Process for MIR3190 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3190 Gene

Drugs & Compounds for MIR3190 Gene

No Compound Related Data Available

Transcripts for MIR3190 Gene

mRNA/cDNA for MIR3190 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3190 Gene

No ASD Table

Relevant External Links for MIR3190 Gene

GeneLoc Exon Structure for
MIR3190
ECgene alternative splicing isoforms for
MIR3190

Expression for MIR3190 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3190 Gene:

MIR3190
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3190 Gene

Orthologs for MIR3190 Gene

Evolution for MIR3190 Gene

ENSEMBL:
Gene Tree for MIR3190 (if available)
TreeFam:
Gene Tree for MIR3190 (if available)

No data available for Orthologs for MIR3190 Gene

Paralogs for MIR3190 Gene

No data available for Paralogs for MIR3190 Gene

Variants for MIR3190 Gene

Sequence variations from dbSNP and Humsavar for MIR3190 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000253110 -- 47,225,454(+) TTGGC(A/T)CAAGG intron-variant, upstream-variant-2KB
rs1001097026 -- 47,225,203(+) ACCAC(A/G)CCCGG intron-variant, upstream-variant-2KB
rs1001179294 -- 47,226,255(+) GCCGC(A/G)CCGCC intron-variant, upstream-variant-2KB
rs1001754423 -- 47,225,099(+) AGAGA(A/C/T)GGGGT intron-variant, upstream-variant-2KB
rs1004550128 -- 47,227,415(+) CCTCA(-/G)TTTCC intron-variant, downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3190 Gene

Variant ID Type Subtype PubMed ID
nsv1067417 CNV gain 25217958
nsv833852 CNV loss 17160897

Relevant External Links for MIR3190 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3190

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3190 Gene

Disorders for MIR3190 Gene

Relevant External Links for MIR3190

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3190

No disorders were found for MIR3190 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3190 Gene

Publications for MIR3190 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia. (PMID: 21606961) Schotte D. … den Boer M.L. (Leukemia 2011) 3 64
  3. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3 64
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3190 Gene

Sources for MIR3190 Gene

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