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Aliases for MIR3180-5 Gene

Subcategory (RNA class) for MIR3180-5 Gene


Quality Score for this RNA gene is


Aliases for MIR3180-5 Gene

  • MicroRNA 3180-5 2 3
  • Hsa-Mir-3180-5 3

External Ids for MIR3180-5 Gene

Previous GeneCards Identifiers for MIR3180-5 Gene

  • GC16U901277
  • GC16M002188
  • GC16M002189
  • GC16M002190

Summaries for MIR3180-5 Gene

Entrez Gene Summary for MIR3180-5 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3180-5 Gene

MIR3180-5 (MicroRNA 3180-5) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3180-5 Gene

Genomics for MIR3180-5 Gene

Genomic Location for MIR3180-5 Gene

2,135,977 bp from pter
2,136,129 bp from pter
153 bases
Minus strand

Genomic View for MIR3180-5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR3180-5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3180-5 Gene

No data available for Regulatory Elements for MIR3180-5 Gene

Proteins for MIR3180-5 Gene

Post-translational modifications for MIR3180-5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3180-5 Gene

Domains for MIR3180-5 Gene

Gene Families for MIR3180-5 Gene

  • MIR :ncRNAs / Micro RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3180-5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3180-5 Gene

Function for MIR3180-5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR3180-5 Gene

Localization for MIR3180-5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3180-5 Gene

Pathways for MIR3180-5 Gene

SuperPathways for MIR3180-5 Gene

No Data Available

Interacting Proteins for MIR3180-5 Gene

Gene Ontology (GO) - Biological Process for MIR3180-5 Gene


No data available for Pathways by source for MIR3180-5 Gene

Transcripts for MIR3180-5 Gene

mRNA/cDNA for MIR3180-5 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3180-5 Gene

No ASD Table

Relevant External Links for MIR3180-5 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR3180-5 Gene

mRNA expression in normal human tissues for MIR3180-5 Gene

genes like me logo Genes that share expressions with MIR3180-5: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for MIR3180-5 Gene

Orthologs for MIR3180-5 Gene

This gene was present in the common ancestor of mammals.

Orthologs for MIR3180-5 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia -- 36
  • 49 (a)
Species with no ortholog for MIR3180-5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR3180-5 Gene

Gene Tree for MIR3180-5 (if available)
Gene Tree for MIR3180-5 (if available)

Paralogs for MIR3180-5 Gene

No data available for Paralogs for MIR3180-5 Gene

Variants for MIR3180-5 Gene

Sequence variations from dbSNP and Humsavar for MIR3180-5 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs11647984 -- 2,138,086(+) tccca(G/T)cactt upstream-variant-2KB
rs12925921 -- 2,137,947(+) TGAGG(C/G)AAATG upstream-variant-2KB
rs34864534 -- 2,138,121(+) CATGA(G/T)GCCAA upstream-variant-2KB
rs181413888 -- 2,137,913(+) GCCAG(A/G)GATCT upstream-variant-2KB
rs185648462 -- 2,137,941(+) AAGAC(A/G)TGAGG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3180-5 Gene

Variant ID Type Subtype PubMed ID
esv2422427 CNV Duplication 17116639
dgv2540n71 CNV Loss 21882294
dgv2544n71 CNV Loss 21882294
dgv2545n71 CNV Loss 21882294
dgv2546n71 CNV Loss 21882294
dgv2549n71 CNV Loss 21882294
dgv2550n71 CNV Loss 21882294
nsv471072 CNV Loss 18288195
nsv905102 CNV Loss 21882294
dgv2556n71 CNV Loss 21882294
dgv2557n71 CNV Loss 21882294
nsv457349 CNV Loss 19166990
dgv2558n71 CNV Loss 21882294
nsv827505 CNV Gain 20364138
nsv827507 CNV Gain 20364138
nsv9332 CNV Loss 18304495
dgv2562n71 CNV Loss 21882294
dgv2563n71 CNV Loss 21882294
esv26637 CNV Loss 19812545
nsv905127 CNV Loss 21882294

Relevant External Links for MIR3180-5 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MIR3180-5 Gene

Disorders for MIR3180-5 Gene

No disorders were found for MIR3180-5 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for MIR3180-5 Gene

Publications for MIR3180-5 Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3

Products for MIR3180-5 Gene

Sources for MIR3180-5 Gene

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