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Aliases for MIR3164 Gene

Subcategory (RNA class) for MIR3164 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3164 Gene

  • MicroRNA 3164 2 3 5
  • Hsa-Mir-3164 3

External Ids for MIR3164 Gene

Previous GeneCards Identifiers for MIR3164 Gene

  • GC11U901687
  • GC11P068850

Summaries for MIR3164 Gene

Entrez Gene Summary for MIR3164 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3164 Gene

MIR3164 (MicroRNA 3164) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3164 Gene

Genomics for MIR3164 Gene

Regulatory Elements for MIR3164 Gene

Enhancers for MIR3164 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G069078 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -3.0 -3009 2.4 TBP MAZ TAF1 ZSCAN4 MAX ZNF335 GATA3 POLR2A ZKSCAN8 HNF4A TPCN2 IGHMBP2 MIR3164 PIR48560
GH11G069086 1 ENCODE dbSUPER 0.7 +3.1 3102 0.2 CTCF FOXA2 CEBPG SCRT2 EZH2 MIXL1 SOX5 GATAD2A HLF FOXA3 MIR3164 ENSG00000260895
GH11G069088 1 ENCODE dbSUPER 0.4 +5.7 5682 0.2 HDGF CTCF RB1 WRNIP1 ARID4B RAD21 POLR2A EGR1 ZNF143 SMC3 MIR3164 ENSG00000260895
GH11G069090 0.9 ENCODE dbSUPER 0.4 +6.0 5957 0.1 CTCF WRNIP1 TRIM22 ARID4B ZNF579 POLR2A KLF9 ZNF143 FOS EZH2 MIR3164 ENSG00000260895
GH11G069101 0.9 ENCODE 0.4 +18.4 18442 0.3 HDGF ATF1 RB1 WRNIP1 ARID4B SIN3A ZBTB7B RAD21 ZEB1 RFX5 TPCN2 ENSG00000260895 MIR3164
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3164 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3164 Gene

Chromosome:
11
Start:
69,083,176 bp from pter
End:
69,083,258 bp from pter
Size:
83 bases
Orientation:
Plus strand

Genomic View for MIR3164 Gene

Genes around MIR3164 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3164 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3164 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3164 Gene

Proteins for MIR3164 Gene

Post-translational modifications for MIR3164 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3164 Gene

Domains & Families for MIR3164 Gene

Gene Families for MIR3164 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3164: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3164 Gene

Function for MIR3164 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3164 Gene

Localization for MIR3164 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3164 Gene

Pathways & Interactions for MIR3164 Gene

SuperPathways for MIR3164 Gene

No Data Available

Interacting Proteins for MIR3164 Gene

Gene Ontology (GO) - Biological Process for MIR3164 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3164 Gene

Drugs & Compounds for MIR3164 Gene

No Compound Related Data Available

Transcripts for MIR3164 Gene

mRNA/cDNA for MIR3164 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3164 Gene

No ASD Table

Relevant External Links for MIR3164 Gene

GeneLoc Exon Structure for
MIR3164
ECgene alternative splicing isoforms for
MIR3164

Expression for MIR3164 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3164 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3164 Gene:

MIR3164
genes like me logo Genes that share expression patterns with MIR3164: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3164 Gene

Orthologs for MIR3164 Gene

Evolution for MIR3164 Gene

ENSEMBL:
Gene Tree for MIR3164 (if available)
TreeFam:
Gene Tree for MIR3164 (if available)

No data available for Orthologs for MIR3164 Gene

Paralogs for MIR3164 Gene

No data available for Paralogs for MIR3164 Gene

Variants for MIR3164 Gene

Sequence variations from dbSNP and Humsavar for MIR3164 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000192593 -- 69,082,324(+) CATGC(A/G)TATAC intron-variant, upstream-variant-2KB
rs1001807615 -- 69,083,679(+) CGGGT(A/G)GCGAT intron-variant, downstream-variant-500B, utr-variant-3-prime
rs1002133702 -- 69,083,487(+) GACTC(A/G)GTTCC intron-variant, downstream-variant-500B, utr-variant-3-prime
rs1003400466 -- 69,082,671(+) TGAAC(C/T)CGTGC intron-variant, downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs1003472467 -- 69,081,287(+) CTCCC(A/G)TCATG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3164 Gene

Variant ID Type Subtype PubMed ID
nsv468620 CNV loss 19166990
nsv469967 CNV loss 18288195
nsv555300 CNV loss 21841781
nsv555301 CNV loss 21841781
nsv825970 CNV gain 20364138
nsv832196 CNV loss 17160897

Relevant External Links for MIR3164 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3164

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3164 Gene

Disorders for MIR3164 Gene

Relevant External Links for MIR3164

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3164

No disorders were found for MIR3164 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3164 Gene

Publications for MIR3164 Gene

  1. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3164 Gene

Sources for MIR3164 Gene

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