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Aliases for MIR3164 Gene

Subcategory (RNA class) for MIR3164 Gene


Quality Score for this RNA gene is


Aliases for MIR3164 Gene

  • MicroRNA 3164 2 3 5
  • Hsa-Mir-3164 3

External Ids for MIR3164 Gene

Previous GeneCards Identifiers for MIR3164 Gene

  • GC11U901687
  • GC11P068850

Summaries for MIR3164 Gene

Entrez Gene Summary for MIR3164 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3164 Gene

MIR3164 (MicroRNA 3164) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3164 Gene

Genomics for MIR3164 Gene

Regulatory Elements for MIR3164 Gene

Enhancers for MIR3164 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F069078 1.4 FANTOM5 Ensembl ENCODE 0.8 -3.0 -3009 2.4 TBP MAZ TAF1 MAX ZNF335 GATA3 POLR2A ZKSCAN8 MYC E2F6 TPCN2 ENSG00000259799 IGHMBP2 PIR48560 MIR3164
GH11F069086 0.7 ENCODE 0.8 +3.1 3102 0.2 GATAD2A SOX5 CTCF FOXA3 HLF CEBPB CEBPG SCRT2 CEBPA ZBTB33 MIR3164 ENSG00000260895
GH11F069101 1.1 Ensembl ENCODE 0.3 +18.6 18572 0.5 HDGF CTCF WRNIP1 ARID4B MAX SIN3A RAD21 ZKSCAN1 ZEB1 RFX5 TPCN2 ENSG00000259799 ENSG00000260895 MIR3164
GH11F069088 0.7 ENCODE 0.4 +5.7 5682 0.2 HDGF CTCF WRNIP1 ARID4B RAD21 POLR2A ZNF143 SMC3 DEK ZNF654 MIR3164 ENSG00000260895
GH11F069089 0.5 ENCODE 0.4 +6.2 6232 0.2 BHLHE40 ZBTB33 FOS TPCN2 MIR3164 ENSG00000260895
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3164 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3164 Gene

69,083,176 bp from pter
69,083,258 bp from pter
83 bases
Plus strand

Genomic View for MIR3164 Gene

Genes around MIR3164 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3164 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3164 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3164 Gene

Proteins for MIR3164 Gene

Post-translational modifications for MIR3164 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3164 Gene

Domains & Families for MIR3164 Gene

Gene Families for MIR3164 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3164: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3164 Gene

Function for MIR3164 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3164 Gene

Localization for MIR3164 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3164 Gene

Pathways & Interactions for MIR3164 Gene

SuperPathways for MIR3164 Gene

No Data Available

Interacting Proteins for MIR3164 Gene

Gene Ontology (GO) - Biological Process for MIR3164 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR3164 Gene

Transcripts for MIR3164 Gene

mRNA/cDNA for MIR3164 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3164 Gene

No ASD Table

Relevant External Links for MIR3164 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR3164 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR3164 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3164 Gene:

genes like me logo Genes that share expression patterns with MIR3164: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3164 Gene

Orthologs for MIR3164 Gene

Evolution for MIR3164 Gene

Gene Tree for MIR3164 (if available)
Gene Tree for MIR3164 (if available)

No data available for Orthologs for MIR3164 Gene

Paralogs for MIR3164 Gene

No data available for Paralogs for MIR3164 Gene

Variants for MIR3164 Gene

Sequence variations from dbSNP and Humsavar for MIR3164 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs111280893 -- 69,082,998(+) AAGAC(A/G)CATGA intron-variant, downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs111305365 -- 69,082,763(+) GTGTG(C/T)GCACA intron-variant, downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs111361137 -- 69,082,773(+) ACATC(A/G)CGTGC intron-variant, downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs111370536 -- 69,083,614(+) AGTCC(G/T)TGCTT intron-variant, downstream-variant-500B, utr-variant-3-prime
rs111381698 -- 69,082,672(+) GAACT(C/T)GTGCC intron-variant, downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for MIR3164 Gene

Variant ID Type Subtype PubMed ID
nsv468620 CNV loss 19166990
nsv469967 CNV loss 18288195
nsv555300 CNV loss 21841781
nsv555301 CNV loss 21841781
nsv825970 CNV gain 20364138
nsv832196 CNV loss 17160897

Relevant External Links for MIR3164 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3164 Gene

Disorders for MIR3164 Gene

Relevant External Links for MIR3164

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR3164 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3164 Gene

Publications for MIR3164 Gene

  1. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3164 Gene

Sources for MIR3164 Gene

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