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Aliases for MIR3161 Gene

Subcategory (RNA class) for MIR3161 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3161 Gene

  • MicroRNA 3161 2 3 5
  • Hsa-Mir-3161 3

External Ids for MIR3161 Gene

Previous GeneCards Identifiers for MIR3161 Gene

  • GC11U901628

Summaries for MIR3161 Gene

Entrez Gene Summary for MIR3161 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3161 Gene

MIR3161 (MicroRNA 3161) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3161 Gene

Genomics for MIR3161 Gene

Regulatory Elements for MIR3161 Gene

Enhancers for MIR3161 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F048092 1.3 Ensembl ENCODE 0.8 -1.4 -1403 6.1 PKNOX1 FEZF1 ZNF2 YY1 CBX5 FOS JUNB TSHZ1 KAT8 MAFF PTPRJ PTPRJ-AS1 MADD NUP160 MIR3161 PIR62326
GH11F048099 1.1 FANTOM5 Ensembl ENCODE 0.4 +8.5 8458 11.3 HDGF PKNOX1 ARNT FEZF1 BRCA1 ZNF2 YY1 ELK1 ZNF143 DEK NUP160 OR4S1 PTPRJ-AS1 PTPRJ OR4B1 PACSIN3 ACP2 C1QTNF4 MADD OR4X2
GH11F048090 1.2 Ensembl ENCODE 0.4 -6.1 -6081 1.0 SIN3A MIER2 FOS FOSL2 REST PTPRJ-AS1 PTPRJ NUP160 MADD MIR3161 PIR62326
GH11F048087 1.3 Ensembl ENCODE 0.4 -8.5 -8481 1.4 HDGF PKNOX1 ARNT SIN3A FEZF1 ZNF2 YY1 ELK1 ZNF143 JUNB PTPRJ PTPRJ-AS1 NUP160 C1QTNF4 MIR3161 PIR62326
GH11F048091 0.4 ENCODE 0.4 -5.5 -5499 0.2 REST PTPRJ-AS1 PTPRJ NUP160 MIR3161 PIR62326
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR3161 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3161 Gene

Chromosome:
11
Start:
48,096,782 bp from pter
End:
48,096,858 bp from pter
Size:
77 bases
Orientation:
Plus strand

Genomic View for MIR3161 Gene

Genes around MIR3161 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3161 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3161 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3161 Gene

Proteins for MIR3161 Gene

Post-translational modifications for MIR3161 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3161 Gene

Domains & Families for MIR3161 Gene

Gene Families for MIR3161 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3161: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3161 Gene

Function for MIR3161 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3161 Gene

Localization for MIR3161 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3161 Gene

Pathways & Interactions for MIR3161 Gene

SuperPathways for MIR3161 Gene

No Data Available

Interacting Proteins for MIR3161 Gene

Gene Ontology (GO) - Biological Process for MIR3161 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3161 Gene

Transcripts for MIR3161 Gene

mRNA/cDNA for MIR3161 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3161 Gene

No ASD Table

Relevant External Links for MIR3161 Gene

GeneLoc Exon Structure for
MIR3161
ECgene alternative splicing isoforms for
MIR3161

Expression for MIR3161 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR3161 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3161 Gene:

MIR3161
genes like me logo Genes that share expression patterns with MIR3161: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3161 Gene

Orthologs for MIR3161 Gene

Evolution for MIR3161 Gene

ENSEMBL:
Gene Tree for MIR3161 (if available)
TreeFam:
Gene Tree for MIR3161 (if available)

No data available for Orthologs for MIR3161 Gene

Paralogs for MIR3161 Gene

No data available for Paralogs for MIR3161 Gene

Variants for MIR3161 Gene

Sequence variations from dbSNP and Humsavar for MIR3161 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs111248258 -- 48,095,994(+) TGGTG(A/G)CTCAC intron-variant, upstream-variant-2KB
rs113294421 -- 48,094,973(+) AGCCG(A/G)GCCAT intron-variant, upstream-variant-2KB
rs11378534 -- 48,095,579(+) TATAC(-/T)TTTTT intron-variant, upstream-variant-2KB
rs11382316 -- 48,096,795(+) CTGAT(-/A)AAGAA intron-variant, nc-transcript-variant
rs114497311 -- 48,096,899(+) CCTTT(G/T)TGATT intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for MIR3161 Gene

Variant ID Type Subtype PubMed ID
dgv1111n100 CNV gain 25217958
dgv1112n100 CNV gain 25217958
esv3891986 CNV gain 25118596
nsv1053528 CNV loss 25217958
nsv467871 CNV gain 19166990
nsv554211 CNV gain 21841781

Relevant External Links for MIR3161 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3161

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3161 Gene

Disorders for MIR3161 Gene

Relevant External Links for MIR3161

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3161

No disorders were found for MIR3161 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3161 Gene

Publications for MIR3161 Gene

  1. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3161 Gene

Sources for MIR3161 Gene

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