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Aliases for MIR3160-1 Gene

Subcategory (RNA class) for MIR3160-1 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3160-1 Gene

  • MicroRNA 3160-1 2 3 5
  • Hsa-Mir-3160-1 3
  • Mir-3160-1 3

External Ids for MIR3160-1 Gene

Previous GeneCards Identifiers for MIR3160-1 Gene

  • GC11U901642
  • GC11M046473
  • GC11M047077
  • GC11M047922
  • GC11M050779
  • GC11M051574

Summaries for MIR3160-1 Gene

Entrez Gene Summary for MIR3160-1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3160-1 Gene

MIR3160-1 (MicroRNA 3160-1) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3160-1 Gene

Genomics for MIR3160-1 Gene

Regulatory Elements for MIR3160-1 Gene

Enhancers for MIR3160-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F046455 0.9 Ensembl ENCODE 0.4 -5.1 -5117 2.8 MAZ PKNOX1 MTA2 HLF CEBPB FEZF1 ZIC2 OSR2 ZNF664 ZNF121 CHRM4 ARHGAP1 ZNF408 F2 ATG13 MIR3160-1 AMBRA1
GH11F046460 0.2 ENCODE 0.4 -9.8 -9818 1.8 HDGF PKNOX1 SAP130 YBX1 TEAD3 EED ZNF143 CREM MAFK MTA2 CHRM4 MDK DGKZ ATG13 LRP4 MIR3160-1 AMBRA1
GH11F046464 0.8 Ensembl ENCODE 0.4 -14.0 -13988 2.1 ZFP64 ZNF140 ZNF266 CEBPG ZNF101 ZNF664 ZNF121 ZNF433 GATAD2A ZNF202 ENSG00000270060 ZNF408 DDB2 RPS10P19 AMBRA1 MDK DGKZ ENSG00000256897 CHRM4 MIR3160-1
GH11F046463 0.2 ENCODE 0.4 -11.2 -11240 0.1 MLLT1 MDK DGKZ CHRM4 ATG13 MIR3160-1 AMBRA1
GH11F046471 0.2 ENCODE 0.3 -20.8 -20820 2.6 ZNF316 CTBP1 MAFG FOS FOSL2 EMSY MAFK ZNF18 CHRM4 F2 ATG13 HARBI1 MIR3160-1 AMBRA1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR3160-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3160-1 Gene

Chromosome:
11
Start:
46,451,805 bp from pter
End:
46,451,889 bp from pter
Size:
85 bases
Orientation:
Minus strand

Genomic View for MIR3160-1 Gene

Genes around MIR3160-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3160-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3160-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3160-1 Gene

ORGUL Member Location for MIR3160-1 Gene

ORGUL Member Location for MIR3160-1 gene

Proteins for MIR3160-1 Gene

Post-translational modifications for MIR3160-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3160-1 Gene

Domains & Families for MIR3160-1 Gene

Gene Families for MIR3160-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3160-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3160-1 Gene

Function for MIR3160-1 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3160-1 Gene

Localization for MIR3160-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3160-1 Gene

Pathways & Interactions for MIR3160-1 Gene

SuperPathways for MIR3160-1 Gene

No Data Available

Interacting Proteins for MIR3160-1 Gene

Gene Ontology (GO) - Biological Process for MIR3160-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3160-1 Gene

Transcripts for MIR3160-1 Gene

mRNA/cDNA for MIR3160-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3160-1 Gene

No ASD Table

Relevant External Links for MIR3160-1 Gene

GeneLoc Exon Structure for
MIR3160-1
ECgene alternative splicing isoforms for
MIR3160-1

Expression for MIR3160-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3160-1 Gene

Orthologs for MIR3160-1 Gene

Evolution for MIR3160-1 Gene

ENSEMBL:
Gene Tree for MIR3160-1 (if available)
TreeFam:
Gene Tree for MIR3160-1 (if available)

No data available for Orthologs for MIR3160-1 Gene

Paralogs for MIR3160-1 Gene

No data available for Paralogs for MIR3160-1 Gene

Variants for MIR3160-1 Gene

Sequence variations from dbSNP and Humsavar for MIR3160-1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs111933477 -- 46,453,071(+) ATACC(A/G)TACCC intron-variant, upstream-variant-2KB
rs112987436 -- 46,453,127(+) CTAGG(A/C)AATCA intron-variant, upstream-variant-2KB
rs113182863 -- 46,451,350(+) ATCAT(C/T)ACAGT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs113206642 -- 46,452,332(+) TAAGG(-/TTT)TTTTT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs114370180 -- 46,453,349(+) CAGCC(C/T)TGAAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3160-1 Gene

Variant ID Type Subtype PubMed ID
esv3626183 CNV gain 21293372

Relevant External Links for MIR3160-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3160-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3160-1 Gene

Disorders for MIR3160-1 Gene

Relevant External Links for MIR3160-1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3160-1

No disorders were found for MIR3160-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3160-1 Gene

Publications for MIR3160-1 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  3. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3 64
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3160-1 Gene

Sources for MIR3160-1 Gene

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