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Aliases for MIR3158-2 Gene

Subcategory (RNA class) for MIR3158-2 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3158-2 Gene

  • MicroRNA 3158-2 2 3
  • Hsa-Mir-3158-1 5
  • Hsa-Mir-3158-2 3
  • Mir-3158-2 3

External Ids for MIR3158-2 Gene

Previous GeneCards Identifiers for MIR3158-2 Gene

  • GC10U901427
  • GC10M103363

Summaries for MIR3158-2 Gene

Entrez Gene Summary for MIR3158-2 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3158-2 Gene

MIR3158-2 (MicroRNA 3158-2) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3158-2 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3158-2 Gene

Genomics for MIR3158-2 Gene

Regulatory Elements for MIR3158-2 Gene

Enhancers for MIR3158-2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H101602 0.8 ENCODE 0.7 -1.4 -1412 0 RB1 ZNF2 RAD21 RFX5 ZNF143 RCOR1 ATF7 ZHX1 SMARCA5 ZNF654 MIR3158-2 RNU6-1165P
GH10H101616 0.8 ENCODE 0.4 -16.0 -16011 1 BCOR HDGF CTCF SIN3A ZMYM3 MAX ZFHX2 EGR1 ATF7 IKZF2 DPCD POLL FGF8 BTRC RNU6-1165P MIR3158-2
GH10H101606 0.7 ENCODE 0.4 -5.8 -5847 1 HDAC1 MTA2 SOX6 TAL1 KLF17 ZNF121 TCF12 ZFHX2 CTBP1 IKZF1 POLL DPCD MIR3158-2 RNU6-1165P
GH10H101610 0.4 ENCODE 0.4 -10.3 -10317 1 MAX MIR3158-2 RNU6-1165P
GH10H101615 0.4 ENCODE 0.4 -13.7 -13702 0 MAFK RNU6-1165P MIR3158-2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3158-2 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3158-2 Gene

Chromosome:
10
Start:
101,601,417 bp from pter
End:
101,601,497 bp from pter
Size:
81 bases
Orientation:
Minus strand

Genomic View for MIR3158-2 Gene

Genes around MIR3158-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3158-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3158-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3158-2 Gene

Proteins for MIR3158-2 Gene

Post-translational modifications for MIR3158-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3158-2 Gene

Domains & Families for MIR3158-2 Gene

Gene Families for MIR3158-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3158-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3158-2 Gene

Function for MIR3158-2 Gene

Animal Model Products

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR3158-2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3158-2 Gene

Localization for MIR3158-2 Gene

Gene Ontology (GO) - Cellular Components for MIR3158-2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 26646931
genes like me logo Genes that share ontologies with MIR3158-2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for MIR3158-2 Gene

Pathways & Interactions for MIR3158-2 Gene

SuperPathways for MIR3158-2 Gene

No Data Available

Interacting Proteins for MIR3158-2 Gene

Gene Ontology (GO) - Biological Process for MIR3158-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3158-2 Gene

Drugs & Compounds for MIR3158-2 Gene

No Compound Related Data Available

Transcripts for MIR3158-2 Gene

mRNA/cDNA for MIR3158-2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR3158-2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3158-2 Gene

No ASD Table

Relevant External Links for MIR3158-2 Gene

GeneLoc Exon Structure for
MIR3158-2
ECgene alternative splicing isoforms for
MIR3158-2

Expression for MIR3158-2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3158-2 Gene

genes like me logo Genes that share expression patterns with MIR3158-2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3158-2 Gene

Orthologs for MIR3158-2 Gene

Evolution for MIR3158-2 Gene

ENSEMBL:
Gene Tree for MIR3158-2 (if available)
TreeFam:
Gene Tree for MIR3158-2 (if available)

No data available for Orthologs for MIR3158-2 Gene

Paralogs for MIR3158-2 Gene

No data available for Paralogs for MIR3158-2 Gene

Variants for MIR3158-2 Gene

Sequence variations from dbSNP and Humsavar for MIR3158-2 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1002220847 -- 101,602,918(+) CATCT(G/T)CCAGC intron-variant, upstream-variant-2KB
rs1002538615 -- 101,601,721(+) ACTGT(C/T)AGAGC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1004046146 -- 101,602,369(+) AGACT(A/C)CCCCA intron-variant, upstream-variant-2KB
rs1004211338 -- 101,603,331(+) AATTA(C/T)ATAGA intron-variant, upstream-variant-2KB
rs1010916410 -- 101,603,332(+) ATTAT(A/G)TAGAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3158-2 Gene

Variant ID Type Subtype PubMed ID
esv2750847 CNV gain 17911159
esv3624382 CNV gain 21293372
nsv1053934 CNV gain 25217958
nsv527185 CNV loss 19592680

Relevant External Links for MIR3158-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3158-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3158-2 Gene

Disorders for MIR3158-2 Gene

Relevant External Links for MIR3158-2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3158-2

No disorders were found for MIR3158-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3158-2 Gene

Publications for MIR3158-2 Gene

  1. Association of MicroRNAs and YRNAs With Platelet Function. (PMID: 26646931) Kaudewitz D … Mayr M (Circulation research 2016) 3 60
  2. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 60
  3. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton CJ … Gunaratne PH (PloS one 2010) 3 60
  4. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3 60
  5. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR3158-2 Gene

Sources for MIR3158-2 Gene

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