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Aliases for MIR3156-3 Gene

Subcategory (RNA class) for MIR3156-3 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3156-3 Gene

  • MicroRNA 3156-3 2 3
  • Hsa-Mir-3156-3 3

External Ids for MIR3156-3 Gene

Previous GeneCards Identifiers for MIR3156-3 Gene

  • GC21U900399
  • GC21M014778

Summaries for MIR3156-3 Gene

Entrez Gene Summary for MIR3156-3 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3156-3 Gene

MIR3156-3 (MicroRNA 3156-3) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3156-3 Gene

Genomics for MIR3156-3 Gene

Genomic Location for MIR3156-3 Gene

Start:
13,406,384 bp from pter
End:
13,406,460 bp from pter
Size:
77 bases
Orientation:
Minus strand

Genomic View for MIR3156-3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR3156-3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3156-3 Gene

No data available for Regulatory Elements for MIR3156-3 Gene

Proteins for MIR3156-3 Gene

Post-translational modifications for MIR3156-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3156-3 Gene

Domains for MIR3156-3 Gene

Gene Families for MIR3156-3 Gene

HGNC:
  • MIR :ncRNAs / Micro RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3156-3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3156-3 Gene

Function for MIR3156-3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR3156-3 Gene

Localization for MIR3156-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3156-3 Gene

Pathways for MIR3156-3 Gene

SuperPathways for MIR3156-3 Gene

No Data Available

Interacting Proteins for MIR3156-3 Gene

Gene Ontology (GO) - Biological Process for MIR3156-3 Gene

None

No data available for Pathways by source for MIR3156-3 Gene

Transcripts for MIR3156-3 Gene

mRNA/cDNA for MIR3156-3 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate MIR3156-3
    • Block miRNA regulation of MIR3156-3 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for MIR3156-3

    Primer Products

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for MIR3156-3 Gene

    No ASD Table

    Relevant External Links for MIR3156-3 Gene

    GeneLoc Exon Structure for
    MIR3156-3
    ECgene alternative splicing isoforms for
    MIR3156-3

    Expression for MIR3156-3 Gene

    No Expression Related Data Available

    In Situ Assay Products

    No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for MIR3156-3 Gene

    Orthologs for MIR3156-3 Gene

    Evolution for MIR3156-3 Gene

    ENSEMBL:
    Gene Tree for MIR3156-3 (if available)
    TreeFam:
    Gene Tree for MIR3156-3 (if available)

    No data available for Orthologs for MIR3156-3 Gene

    Paralogs for MIR3156-3 Gene

    No data available for Paralogs for MIR3156-3 Gene

    Variants for MIR3156-3 Gene

    Sequence variations from dbSNP and Humsavar for MIR3156-3 Gene

    SNP ID Clin Chr 21 pos Sequence Context AA Info Type MAF
    rs2258752 -- 13,406,693(-) CTCTT(C/T)TTCCA upstream-variant-2KB
    rs2481808 -- 13,406,307(+) TCTTC(A/G)TAGGT downstream-variant-500B
    rs2481809 -- 13,406,363(+) AGTTG(A/G)ATTTC downstream-variant-500B
    rs2747232 -- 13,406,400(-) CTTCC(A/T)GATCT nc-transcript-variant
    rs2747233 -- 13,405,886(-) GTTCA(C/T)CATAG downstream-variant-500B

    Structural Variations from Database of Genomic Variants (DGV) for MIR3156-3 Gene

    Variant ID Type Subtype PubMed ID
    esv2751923 CNV Loss 17911159
    dgv1351e1 CNV Complex 17122850
    dgv4670n71 CNV Loss 21882294
    nsv442489 CNV CNV 18776908
    nsv913359 CNV Loss 21882294
    dgv4671n71 CNV Loss 21882294
    nsv469583 CNV Complex 16826518
    dgv1352e1 CNV Complex 17122850
    essv5592 CNV CNV 17122850
    nsv428383 CNV Loss 18775914
    nsv470875 CNV Gain 18288195
    nsv470876 CNV Loss 18288195
    dgv36n64 CNV Loss 17921354
    nsv515654 CNV Gain+Loss 19592680
    esv34414 CNV Gain 17911159
    essv4110 CNV CNV 17122850
    dgv4672n71 CNV Loss 21882294
    dgv4673n71 CNV Loss 21882294
    dgv1353e1 CNV Complex 17122850
    nsv913365 CNV Loss 21882294
    nsv913366 CNV Gain+Loss 21882294
    nsv913367 CNV Gain 21882294
    nsv913369 CNV Loss 21882294
    nsv913370 CNV Gain 21882294
    dgv4674n71 CNV Loss 21882294
    nsv913372 CNV Gain 21882294
    nsv469555 CNV Loss 16826518
    nsv471707 CNV Gain+Loss 15918152
    nsv459090 CNV Loss 19166990
    nsv817913 CNV Gain 17921354

    Relevant External Links for MIR3156-3 Gene

    HapMap Linkage Disequilibrium report
    MIR3156-3

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MIR3156-3 Gene

    Disorders for MIR3156-3 Gene

    No disorders were found for MIR3156-3 Gene.

    No data available for UniProtKB/Swiss-Prot for MIR3156-3 Gene

    Publications for MIR3156-3 Gene

    1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
    2. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3
    3. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3

    Products for MIR3156-3 Gene

    Sources for MIR3156-3 Gene

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