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Aliases for MIR3153 Gene

Subcategory (RNA class) for MIR3153 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3153 Gene

  • MicroRNA 3153 2 3 5
  • Hsa-Mir-3153 3
  • Mir-3153 3

External Ids for MIR3153 Gene

Previous GeneCards Identifiers for MIR3153 Gene

  • GC09U901510
  • GC09P091927

Summaries for MIR3153 Gene

Entrez Gene Summary for MIR3153 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3153 Gene

MIR3153 (MicroRNA 3153) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3153 Gene

Genomics for MIR3153 Gene

Regulatory Elements for MIR3153 Gene

Enhancers for MIR3153 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F089309 1.1 ENCODE 0.8 +0.1 83 6.4 HDGF PKNOX1 CREB3L1 ARNT WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YY1 CKS2 SECISBP2 SEMA4D MIR3153
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3153 on UCSC Golden Path with GeneCards custom track

Promoters for MIR3153 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001307875 -125 4601 HDGF PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF143

Genomic Location for MIR3153 Gene

Chromosome:
9
Start:
89,312,225 bp from pter
End:
89,312,306 bp from pter
Size:
82 bases
Orientation:
Plus strand

Genomic View for MIR3153 Gene

Genes around MIR3153 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3153 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3153 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3153 Gene

Proteins for MIR3153 Gene

Post-translational modifications for MIR3153 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3153 Gene

Domains & Families for MIR3153 Gene

Gene Families for MIR3153 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3153: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3153 Gene

Function for MIR3153 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3153 Gene

Localization for MIR3153 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3153 Gene

Pathways & Interactions for MIR3153 Gene

SuperPathways for MIR3153 Gene

No Data Available

Interacting Proteins for MIR3153 Gene

Gene Ontology (GO) - Biological Process for MIR3153 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3153 Gene

Transcripts for MIR3153 Gene

mRNA/cDNA for MIR3153 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3153 Gene

No ASD Table

Relevant External Links for MIR3153 Gene

GeneLoc Exon Structure for
MIR3153
ECgene alternative splicing isoforms for
MIR3153

Expression for MIR3153 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR3153 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3153 Gene:

MIR3153
genes like me logo Genes that share expression patterns with MIR3153: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3153 Gene

Orthologs for MIR3153 Gene

Evolution for MIR3153 Gene

ENSEMBL:
Gene Tree for MIR3153 (if available)
TreeFam:
Gene Tree for MIR3153 (if available)

No data available for Orthologs for MIR3153 Gene

Paralogs for MIR3153 Gene

No data available for Paralogs for MIR3153 Gene

Variants for MIR3153 Gene

Sequence variations from dbSNP and Humsavar for MIR3153 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs11137560 -- 89,311,385(+) GCTCC(A/C/G)TCAgc intron-variant, upstream-variant-2KB
rs114389358 -- 89,310,907(+) GAACT(G/T)TCCAC nc-transcript-variant, upstream-variant-2KB
rs11548887 -- 89,311,265(+) CTCTC(C/G)TTTCA upstream-variant-2KB, utr-variant-5-prime
rs115956447 -- 89,312,571(+) GTAGC(A/G)TGGAA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs116444716 -- 89,311,939(+) GTGGT(A/G/T)TAAGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3153 Gene

Variant ID Type Subtype PubMed ID
nsv831651 CNV gain 17160897
nsv1041327 CNV gain 25217958
esv3621014 CNV gain 21293372

Relevant External Links for MIR3153 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3153

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3153 Gene

Disorders for MIR3153 Gene

Relevant External Links for MIR3153

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3153

No disorders were found for MIR3153 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3153 Gene

Publications for MIR3153 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3153 Gene

Sources for MIR3153 Gene

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