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Aliases for MIR3150B Gene

Subcategory (RNA class) for MIR3150B Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3150B Gene

  • MicroRNA 3150b 2 3 5
  • Hsa-Mir-3150b 3
  • Mir-3150b 3

External Ids for MIR3150B Gene

Previous GeneCards Identifiers for MIR3150B Gene

  • GC08U901483
  • GC08M096085

Summaries for MIR3150B Gene

Entrez Gene Summary for MIR3150B Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3150B Gene

MIR3150B (MicroRNA 3150b) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3150B Gene

Genomics for MIR3150B Gene

Regulatory Elements for MIR3150B Gene

Enhancers for MIR3150B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G095071 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -1.2 -1164 5.5 HDGF PKNOX1 FOXA2 ATF1 MLX ARID4B DMAP1 ZNF48 YY1 ETS1 LOC105375650 PLEKHF2 INTS8 MIR3150B ENSG00000254248
GH08G095085 1.3 Ensembl ENCODE dbSUPER 0.4 -13.2 -13181 0.8 GTF2F1 RAD21 RFX5 CTBP1 GATA3 ZNF207 RCOR1 RFX1 ZHX2 USF2 LOC105375650 ENSG00000254248 MIR3150B
GH08G095082 0.2 dbSUPER 0.4 -10.6 -10579 1.3 LOC105375650 ENSG00000254248 MIR3150B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3150B on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3150B Gene

Chromosome:
8
Start:
95,072,911 bp from pter
End:
95,072,996 bp from pter
Size:
86 bases
Orientation:
Minus strand

Genomic View for MIR3150B Gene

Genes around MIR3150B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3150B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3150B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3150B Gene

ORGUL Member Location for MIR3150B Gene

ORGUL Member Location for MIR3150B gene

Proteins for MIR3150B Gene

Post-translational modifications for MIR3150B Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3150B Gene

Domains & Families for MIR3150B Gene

Gene Families for MIR3150B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3150B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3150B Gene

Function for MIR3150B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3150B Gene

Localization for MIR3150B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3150B Gene

Pathways & Interactions for MIR3150B Gene

SuperPathways for MIR3150B Gene

No Data Available

Interacting Proteins for MIR3150B Gene

Gene Ontology (GO) - Biological Process for MIR3150B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3150B Gene

Drugs & Compounds for MIR3150B Gene

No Compound Related Data Available

Transcripts for MIR3150B Gene

mRNA/cDNA for MIR3150B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3150B Gene

No ASD Table

Relevant External Links for MIR3150B Gene

GeneLoc Exon Structure for
MIR3150B
ECgene alternative splicing isoforms for
MIR3150B

Expression for MIR3150B Gene

mRNA differential expression in normal tissues according to GTEx for MIR3150B Gene

This gene is overexpressed in Testis (x31.0).

NURSA nuclear receptor signaling pathways regulating expression of MIR3150B Gene:

MIR3150B

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3150B Gene

Orthologs for MIR3150B Gene

Evolution for MIR3150B Gene

ENSEMBL:
Gene Tree for MIR3150B (if available)
TreeFam:
Gene Tree for MIR3150B (if available)

No data available for Orthologs for MIR3150B Gene

Paralogs for MIR3150B Gene

No data available for Paralogs for MIR3150B Gene

Variants for MIR3150B Gene

Sequence variations from dbSNP and Humsavar for MIR3150B Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000110320 -- 95,074,901(+) TGCAA(A/G)CTCCA intron-variant, upstream-variant-2KB
rs1000999547 -- 95,073,868(+) GAATC(C/T)TGATT intron-variant, upstream-variant-2KB
rs1001976906 -- 95,074,862(+) GAGCC(C/T)TTAGA intron-variant, upstream-variant-2KB
rs1002578201 -- 95,073,434(+) CCGGG(A/G)AGGGA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1003204520 -- 95,074,950(+) AAAGC(A/G)GGAAT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3150B Gene

Variant ID Type Subtype PubMed ID
nsv508520 CNV deletion 20534489

Relevant External Links for MIR3150B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3150B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3150B Gene

Disorders for MIR3150B Gene

Relevant External Links for MIR3150B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3150B

No disorders were found for MIR3150B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3150B Gene

Publications for MIR3150B Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  3. Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia. (PMID: 21606961) Schotte D. … den Boer M.L. (Leukemia 2011) 3 64
  4. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  5. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3150B Gene

Sources for MIR3150B Gene

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