Free for academic non-profit institutions. Other users need a Commercial license

MIR3144 Gene(RNA Gene)

MicroRNA 3144

GCID:
GC06P120015
GIFtS:
13
Genes Participants
UDN Logo

Aliases for MIR3144 Gene

Subcategory (RNA class) for MIR3144 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3144 Gene

  • MicroRNA 3144 2 3 5
  • Hsa-Mir-3144 3
  • Mir-3144 3

External Ids for MIR3144 Gene

Previous GeneCards Identifiers for MIR3144 Gene

  • GC06U901964
  • GC06P120336

Summaries for MIR3144 Gene

Entrez Gene Summary for MIR3144 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3144 Gene

MIR3144 (MicroRNA 3144) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3144 Gene

Genomics for MIR3144 Gene

Products:

  1. Regulatory Element

Regulatory Elements for MIR3144 Gene

Enhancers for MIR3144 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G120124 0.5 FANTOM5 0.1 +109.5 109527 0.4 CTCF CEBPG MIR3144 RNU6-214P GC06M120527
GH06G120278 0.5 ENCODE 0.1 +264.1 264085 1.7 POLR2A SMARCA4 REST EP300 GC06M120527 RNU6-214P MIR3144
GH06G119856 0.5 Ensembl 0.1 -158.7 -158679 0.2 IRF2 ZNF512 IRF1 LOC105377975 MIR3144
GH06G120197 0.4 ENCODE 0.1 +183.2 183161 1.2 FOSL1 JUND MIR3144 GC06M120527 RNU6-214P
GH06G120260 0.2 ENCODE 0.1 +245.8 245751 0.2 MIR3144 GC06M120527 RNU6-214P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3144 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3144 Gene

Chromosome:
6
Start:
120,015,179 bp from pter
End:
120,015,257 bp from pter
Size:
79 bases
Orientation:
Plus strand

Genomic View for MIR3144 Gene

Genes around MIR3144 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3144 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3144 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIR3144 Gene

Proteins for MIR3144 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for MIR3144 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3144 Gene

Domains & Families for MIR3144 Gene

Gene Families for MIR3144 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3144: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3144 Gene

Function for MIR3144 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

miRNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3144 Gene

Localization for MIR3144 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3144 Gene

Pathways & Interactions for MIR3144 Gene

SuperPathways for MIR3144 Gene

PathCards logo More details on SuperPathways for MIR3144
No Data Available

Interacting Proteins for MIR3144 Gene

Gene Ontology (GO) - Biological Process for MIR3144 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3144 Gene

Drugs & Compounds for MIR3144 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MIR3144 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for MIR3144 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3144 Gene

No ASD Table

Relevant External Links for MIR3144 Gene

GeneLoc Exon Structure for
MIR3144
ECgene alternative splicing isoforms for
MIR3144

Expression for MIR3144 Gene

Products:

  1. Primer

NURSA nuclear receptor signaling pathways regulating expression of MIR3144 Gene:

MIR3144
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3144 Gene

Orthologs for MIR3144 Gene

Evolution for MIR3144 Gene

ENSEMBL:
Gene Tree for MIR3144 (if available)
TreeFam:
Gene Tree for MIR3144 (if available)

No data available for Orthologs for MIR3144 Gene

Paralogs for MIR3144 Gene

No data available for Paralogs for MIR3144 Gene

Variants for MIR3144 Gene

Sequence variations from dbSNP and Humsavar for MIR3144 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1002535662 -- 120,014,029(+) TTTTA(C/G)ATTTA upstream-variant-2KB
rs1003041457 -- 120,015,680(+) CTATG(C/T)CAGAA downstream-variant-500B
rs1004593574 -- 120,015,338(+) CATTA(A/G)CAGAA downstream-variant-500B
rs1004716267 -- 120,013,454(+) ATGGT(A/G)GCTCT upstream-variant-2KB
rs1005599438 -- 120,014,011(+) GTAGT(G/T)TATAC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3144 Gene

Variant ID Type Subtype PubMed ID
nsv1016699 CNV loss 25217958
nsv1020108 CNV gain 25217958
nsv604561 CNV loss 21841781

Relevant External Links for MIR3144 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3144

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3144 Gene

Disorders for MIR3144 Gene

Relevant External Links for MIR3144

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3144

No disorders were found for MIR3144 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3144 Gene

Publications for MIR3144 Gene

  1. Two less common human microRNAs miR-875 and miR-3144 target a conserved site of E6 oncogene in most high-risk human papillomavirus subtypes. (PMID: 25913515) Lin L. … Li Y. (Protein Cell 2015) 3 64
  2. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  3. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  4. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3 64
  5. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3144 Gene

Sources for MIR3144 Gene

Content
Loading form....