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Aliases for MIR3142 Gene

Subcategory (RNA class) for MIR3142 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3142 Gene

  • MicroRNA 3142 2 3 5
  • Hsa-Mir-3142 3

External Ids for MIR3142 Gene

Previous GeneCards Identifiers for MIR3142 Gene

  • GC05U901396
  • GC05P159901

Summaries for MIR3142 Gene

Entrez Gene Summary for MIR3142 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3142 Gene

MIR3142 (MicroRNA 3142) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3142 Gene

Genomics for MIR3142 Gene

Regulatory Elements for MIR3142 Gene

Enhancers for MIR3142 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F160466 1.1 FANTOM5 Ensembl ENCODE 0.8 -1.9 -1936 12.3 HDGF PKNOX1 MLX WRNIP1 ZFP64 ARID4B SIN3A YBX1 FEZF1 DMAP1 MIR146A MIR3142 MIR3142HG
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR3142 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3142 Gene

Chromosome:
5
Start:
160,474,402 bp from pter
End:
160,474,525 bp from pter
Size:
124 bases
Orientation:
Plus strand

Genomic View for MIR3142 Gene

Genes around MIR3142 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3142 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3142 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3142 Gene

Proteins for MIR3142 Gene

Post-translational modifications for MIR3142 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3142 Gene

Domains & Families for MIR3142 Gene

Gene Families for MIR3142 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3142: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3142 Gene

Function for MIR3142 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3142 Gene

Localization for MIR3142 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3142 Gene

Pathways & Interactions for MIR3142 Gene

SuperPathways for MIR3142 Gene

No Data Available

Interacting Proteins for MIR3142 Gene

Gene Ontology (GO) - Biological Process for MIR3142 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3142 Gene

Transcripts for MIR3142 Gene

mRNA/cDNA for MIR3142 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3142 Gene

No ASD Table

Relevant External Links for MIR3142 Gene

GeneLoc Exon Structure for
MIR3142
ECgene alternative splicing isoforms for
MIR3142

Expression for MIR3142 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3142 Gene:

MIR3142
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3142 Gene

Orthologs for MIR3142 Gene

Evolution for MIR3142 Gene

ENSEMBL:
Gene Tree for MIR3142 (if available)
TreeFam:
Gene Tree for MIR3142 (if available)

No data available for Orthologs for MIR3142 Gene

Paralogs for MIR3142 Gene

No data available for Paralogs for MIR3142 Gene

Variants for MIR3142 Gene

Sequence variations from dbSNP and Humsavar for MIR3142 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs111238145 -- 160,472,802(+) CCCTC(A/G)CCCTC intron-variant, upstream-variant-2KB
rs111291928 -- 160,474,261(+) TGGTG(A/T)TGCTC intron-variant, upstream-variant-2KB
rs111641099 -- 160,472,765(+) TTTCT(-/CCTCTC)CCTCT intron-variant, upstream-variant-2KB
rs111911288 -- 160,473,154(+) TATAG(A/T)CAGTG intron-variant, upstream-variant-2KB
rs114221947 -- 160,472,970(+) GCTGG(C/T)GGGCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3142 Gene

Variant ID Type Subtype PubMed ID
esv3607372 CNV gain 21293372
nsv1015634 CNV gain 25217958
nsv1026980 CNV gain 25217958

Relevant External Links for MIR3142 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3142

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3142 Gene

Disorders for MIR3142 Gene

Relevant External Links for MIR3142

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3142

No disorders were found for MIR3142 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3142 Gene

Publications for MIR3142 Gene

  1. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3142 Gene

Sources for MIR3142 Gene

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