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Aliases for MIR3140 Gene

Subcategory (RNA class) for MIR3140 Gene


Quality Score for this RNA gene is


Aliases for MIR3140 Gene

  • MicroRNA 3140 2 3 5
  • Hsa-Mir-3140 3
  • Mir-3140 3

External Ids for MIR3140 Gene

Previous GeneCards Identifiers for MIR3140 Gene

  • GC04U901337
  • GC04M153410

Summaries for MIR3140 Gene

Entrez Gene Summary for MIR3140 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3140 Gene

MIR3140 (MicroRNA 3140) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3140 Gene

Genomics for MIR3140 Gene

Regulatory Elements for MIR3140 Gene

Enhancers for MIR3140 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F152484 1.2 Ensembl ENCODE 0.8 +3.1 3112 2.7 PKNOX1 ATF1 ARID4B YY1 FOS ZHX2 JUNB TBX21 PPARG KAT8 FBXW7 MIR3140 GC04P152461
GH04F152489 0.4 Ensembl 0.8 -0.5 -485 0.2 KDM1A FBXW7 LOC105377494 MIR3140
GH04F152488 0.2 ENCODE 0.8 +1.0 973 0.2 FOSL1 NR2F1 ADNP NR2F6 PRDM1 FBXW7 MIR3140 GC04P152461
GH04F152479 0.4 Ensembl 0.4 +9.7 9716 0.6 HDAC1 ATF1 ZNF792 CEBPG ZNF644 TRIM24 HES1 HLF CEBPB EP300 LOC105377494 FBXW7 MIR3140 GC04P152461
GH04F152500 1.1 Ensembl ENCODE 0.4 -11.8 -11816 0.7 CTCF ZNF654 JUNB TRIM22 REST RAD21 ZNF664 JUND IKZF1 EED FBXW7 LOC105377494 MIR3140
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR3140 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3140 Gene

152,489,327 bp from pter
152,489,416 bp from pter
90 bases
Minus strand

Genomic View for MIR3140 Gene

Genes around MIR3140 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3140 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3140 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3140 Gene

ORGUL Member Location for MIR3140 Gene

ORGUL Member Location for MIR3140 gene

Proteins for MIR3140 Gene

Post-translational modifications for MIR3140 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3140 Gene

Domains & Families for MIR3140 Gene

Gene Families for MIR3140 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3140: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3140 Gene

Function for MIR3140 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3140 Gene

Localization for MIR3140 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3140 Gene

Pathways & Interactions for MIR3140 Gene

SuperPathways for MIR3140 Gene

No Data Available

Interacting Proteins for MIR3140 Gene

Gene Ontology (GO) - Biological Process for MIR3140 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR3140 Gene

Transcripts for MIR3140 Gene

mRNA/cDNA for MIR3140 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3140 Gene

No ASD Table

Relevant External Links for MIR3140 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR3140 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR3140 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3140 Gene:

genes like me logo Genes that share expression patterns with MIR3140: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3140 Gene

Orthologs for MIR3140 Gene

Evolution for MIR3140 Gene

Gene Tree for MIR3140 (if available)
Gene Tree for MIR3140 (if available)

No data available for Orthologs for MIR3140 Gene

Paralogs for MIR3140 Gene

No data available for Paralogs for MIR3140 Gene

Variants for MIR3140 Gene

Sequence variations from dbSNP and Humsavar for MIR3140 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs10021011 -- 152,489,238(+) GCCCT(A/C)GAATT intron-variant, downstream-variant-500B
rs116239055 -- 152,489,330(+) GTCAC(G/T)CCTGA intron-variant, nc-transcript-variant
rs116514847 -- 152,488,966(+) AGGTA(A/G)TTTAT intron-variant, downstream-variant-500B
rs13147120 -- 152,489,163(+) AAGGC(G/T)CAAGG intron-variant, downstream-variant-500B
rs138297219 -- 152,489,945(+) TCTTT(-/A)AAAAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3140 Gene

Variant ID Type Subtype PubMed ID
nsv830116 CNV gain 17160897

Relevant External Links for MIR3140 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3140 Gene

Disorders for MIR3140 Gene

Relevant External Links for MIR3140

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR3140 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3140 Gene

Publications for MIR3140 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  3. Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia. (PMID: 21606961) Schotte D. … den Boer M.L. (Leukemia 2011) 3 64
  4. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  5. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3 64

Products for MIR3140 Gene

Sources for MIR3140 Gene

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