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Aliases for MIR3139 Gene

Subcategory (RNA class) for MIR3139 Gene


Quality Score for this RNA gene is


Aliases for MIR3139 Gene

  • MicroRNA 3139 2 3 5
  • Hsa-Mir-3139 3

External Ids for MIR3139 Gene

Previous GeneCards Identifiers for MIR3139 Gene

  • GC04U901257
  • GC04P144264

Summaries for MIR3139 Gene

Entrez Gene Summary for MIR3139 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3139 Gene

MIR3139 (MicroRNA 3139) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3139 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3139 Gene

Genomics for MIR3139 Gene

Regulatory Elements for MIR3139 Gene

Enhancers for MIR3139 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H143343 1.4 Ensembl ENCODE dbSUPER 0.7 +2.8 2829 5.8 HDAC1 PKNOX1 PTBP1 TBL1XR1 ARNT FEZF1 TCF12 GATA2 SCRT2 FOS MIR3139 RPS2P20
GH04H143341 0.6 Ensembl dbSUPER 0.7 -1.9 -1860 0.4 ZBTB40 GC04M143335 MIR3139
GH04H143339 0.5 Ensembl dbSUPER 0.7 -4.0 -3960 0.2 GC04M143335 MIR3139
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3139 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3139 Gene

Genomic Locations for MIR3139 Gene
76 bases
Plus strand

Genomic View for MIR3139 Gene

Genes around MIR3139 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3139 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3139 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3139 Gene

Proteins for MIR3139 Gene

Post-translational modifications for MIR3139 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3139 Gene

Domains & Families for MIR3139 Gene

Gene Families for MIR3139 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3139: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3139 Gene

Function for MIR3139 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3139 Gene

Localization for MIR3139 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3139 Gene

Pathways & Interactions for MIR3139 Gene

SuperPathways for MIR3139 Gene

No Data Available

Interacting Proteins for MIR3139 Gene

Gene Ontology (GO) - Biological Process for MIR3139 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR3139 Gene

Drugs & Compounds for MIR3139 Gene

No Compound Related Data Available

Transcripts for MIR3139 Gene

mRNA/cDNA for MIR3139 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3139 Gene

No ASD Table

Relevant External Links for MIR3139 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR3139 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3139 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3139 Gene:

genes like me logo Genes that share expression patterns with MIR3139: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3139 Gene

Orthologs for MIR3139 Gene

Evolution for MIR3139 Gene

Gene Tree for MIR3139 (if available)
Gene Tree for MIR3139 (if available)

No data available for Orthologs for MIR3139 Gene

Paralogs for MIR3139 Gene

No data available for Paralogs for MIR3139 Gene

Variants for MIR3139 Gene

Sequence variations from dbSNP and Humsavar for MIR3139 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000398335 -- 143,343,537(+) TGCCA(C/T)GTGTG intron-variant, downstream-variant-500B, utr-variant-5-prime
rs1000746710 -- 143,343,232(+) GGGTG(G/T)AAGGG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1004176363 -- 143,342,291(+) CTGCT(G/T)GCTCT intron-variant, upstream-variant-2KB
rs1005460782 -- 143,342,712(+) GCCAC(C/T)ACGCC intron-variant, upstream-variant-2KB
rs1005728231 -- 143,341,657(+) GCTGT(C/T)AATTA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3139 Gene

Variant ID Type Subtype PubMed ID
nsv1033902 CNV gain 25217958
nsv1026110 CNV gain 25217958

Relevant External Links for MIR3139 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3139 Gene

Disorders for MIR3139 Gene

Relevant External Links for MIR3139

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR3139 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3139 Gene

Publications for MIR3139 Gene

  1. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3 60
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR3139 Gene

Sources for MIR3139 Gene

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