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Aliases for MIR3138 Gene

Subcategory (RNA class) for MIR3138 Gene


Quality Score for this RNA gene is


Aliases for MIR3138 Gene

  • MicroRNA 3138 2 3 5
  • Hsa-Mir-3138 3
  • Mir-3138 3

External Ids for MIR3138 Gene

Previous GeneCards Identifiers for MIR3138 Gene

  • GC04U901261
  • GC04M009413

Summaries for MIR3138 Gene

Entrez Gene Summary for MIR3138 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3138 Gene

MIR3138 (MicroRNA 3138) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3138 Gene

Genomics for MIR3138 Gene

Regulatory Elements for MIR3138 Gene

Enhancers for MIR3138 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F010091 1.4 VISTA Ensembl ENCODE 0.3 -23.3 -23308 20.6 HDGF HDAC1 CBX3 KLF17 SIN3A ZNF366 SCRT2 ZNF548 FOS CREM SLC2A9 ENSG00000261490 LOC105374476 GC04M010099 MIR3138
GH04F010087 0.5 ENCODE 0.4 -10.4 -10443 3.2 CTCF POLR2A ZIC2 RAD21 SLC2A9 RNA5SP155 WDR1 ENSG00000261490 LOC105374476 GC04M010099 MIR3138
GH04F010084 0.4 ENCODE 0.4 -6.5 -6525 1.7 POLR2A SLC2A9 RNA5SP155 WDR1 ENSG00000261490 LOC105374476 MIR3138 GC04M010099
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3138 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3138 Gene

10,078,611 bp from pter
10,078,692 bp from pter
82 bases
Minus strand

Genomic View for MIR3138 Gene

Genes around MIR3138 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3138 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3138 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3138 Gene

ORGUL Member Location for MIR3138 Gene

ORGUL Member Location for MIR3138 gene

Proteins for MIR3138 Gene

Post-translational modifications for MIR3138 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3138 Gene

Domains & Families for MIR3138 Gene

Gene Families for MIR3138 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3138: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3138 Gene

Function for MIR3138 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3138 Gene

Localization for MIR3138 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3138 Gene

Pathways & Interactions for MIR3138 Gene

SuperPathways for MIR3138 Gene

No Data Available

Interacting Proteins for MIR3138 Gene

Gene Ontology (GO) - Biological Process for MIR3138 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR3138 Gene

Transcripts for MIR3138 Gene

mRNA/cDNA for MIR3138 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3138 Gene

No ASD Table

Relevant External Links for MIR3138 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR3138 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR3138 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3138 Gene:

genes like me logo Genes that share expression patterns with MIR3138: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3138 Gene

Orthologs for MIR3138 Gene

Evolution for MIR3138 Gene

Gene Tree for MIR3138 (if available)
Gene Tree for MIR3138 (if available)

No data available for Orthologs for MIR3138 Gene

Paralogs for MIR3138 Gene

No data available for Paralogs for MIR3138 Gene

Variants for MIR3138 Gene

Sequence variations from dbSNP and Humsavar for MIR3138 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs10516200 -- 10,080,532(+) CCTAA(A/C)GCAAT intron-variant, upstream-variant-2KB
rs111411642 -- 10,079,616(+) TCTTC(C/T)GGTTC intron-variant, upstream-variant-2KB
rs111979584 -- 10,080,449(+) ACCCC(C/G)ACTGG intron-variant, upstream-variant-2KB
rs113833649 -- 10,080,672(+) AGATA(A/G)TATCT intron-variant, upstream-variant-2KB
rs115299967 -- 10,079,775(+) TGGAT(A/C)GCGAT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3138 Gene

Variant ID Type Subtype PubMed ID
nsv829857 CNV gain 17160897
nsv469621 CNV loss 16826518
nsv428438 CNV gain 18775914
nsv1014335 CNV gain 25217958
nsv1013487 CNV gain 25217958
nsv1005698 CNV gain 25217958
esv3599598 CNV gain 21293372
esv3599589 CNV gain 21293372
esv2759222 CNV gain+loss 17122850
esv2752052 CNV gain 17911159
dgv5117n100 CNV gain 25217958

Relevant External Links for MIR3138 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3138 Gene

Disorders for MIR3138 Gene

Relevant External Links for MIR3138

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR3138 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3138 Gene

Publications for MIR3138 Gene

  1. MicroRNA expression profiles in pediatric dysembryoplastic neuroepithelial tumors. (PMID: 26698155) Braoudaki M. … Kanavakis E. (Med. Oncol. 2016) 3 64
  2. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  3. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  4. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3 64
  5. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3138 Gene

Sources for MIR3138 Gene

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