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Aliases for MIR3138 Gene

Subcategory (RNA class) for MIR3138 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3138 Gene

  • MicroRNA 3138 2 3 5
  • Hsa-Mir-3138 3
  • Mir-3138 3

External Ids for MIR3138 Gene

Previous GeneCards Identifiers for MIR3138 Gene

  • GC04U901261
  • GC04M009413

Summaries for MIR3138 Gene

Entrez Gene Summary for MIR3138 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3138 Gene

MIR3138 (MicroRNA 3138) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3138 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3138 Gene

Genomics for MIR3138 Gene

GeneHancer (GH) Regulatory Elements for MIR3138 Gene

Promoters and enhancers for MIR3138 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I010074 Enhancer 0.7 dbSUPER 550.8 +0.5 523 7 CTCF RXRA JUN ZMYM3 RAD21 RARA FOSL1 POLR2A IKZF1 ZFP36 MIR3138 SLC2A9 RNA5SP155 WDR1 ENSG00000261490 GC04M010074
GH04I010091 Enhancer 1.5 VISTA Ensembl ENCODE dbSUPER 0.3 -23.3 -23307 20.6 FOXA2 ZSCAN4 EGR1 ZNF366 SCRT2 ZNF548 ATF7 FOS IKZF2 RUNX3 GC04M010099 SLC2A9 ENSG00000261490 LOC105374476 PIRC17 WDR1 MIR3138
GH04I010087 Enhancer 0.7 ENCODE dbSUPER 0.4 -10.4 -10442 3.2 CTCF POLR2A ZNF143 ZIC2 RAD21 SLC2A9 RNA5SP155 WDR1 ENSG00000261490 LOC105374476 GC04M010099 MIR3138
GH04I010084 Enhancer 0.5 ENCODE dbSUPER 0.4 -6.5 -6524 1.7 NFATC1 SLC2A9 WDR1 RNA5SP155 ENSG00000261490 LOC105374476 MIR3138 GC04M010099
GH04I010081 Enhancer 0.2 dbSUPER 0.8 -4.2 -4211 2.5 SLC2A9 WDR1 RNA5SP155 ENSG00000261490 MIR3138 GC04M010099
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR3138 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3138 Gene

Genomic Locations for MIR3138 Gene
chr4:10,078,611-10,078,692
(GRCh38/hg38)
Size:
82 bases
Orientation:
Minus strand
chr4:10,080,235-10,080,316
(GRCh37/hg19)

Genomic View for MIR3138 Gene

Genes around MIR3138 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3138 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3138 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3138 Gene

ORGUL Member Location for MIR3138 Gene

ORGUL Member Location for MIR3138 gene

Proteins for MIR3138 Gene

Post-translational modifications for MIR3138 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3138 Gene

Domains & Families for MIR3138 Gene

Gene Families for MIR3138 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3138: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3138 Gene

Function for MIR3138 Gene

Phenotypes From GWAS Catalog for MIR3138 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3138 Gene

Localization for MIR3138 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3138 Gene

Pathways & Interactions for MIR3138 Gene

SuperPathways for MIR3138 Gene

No Data Available

Interacting Proteins for MIR3138 Gene

Gene Ontology (GO) - Biological Process for MIR3138 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3138 Gene

Drugs & Compounds for MIR3138 Gene

No Compound Related Data Available

Transcripts for MIR3138 Gene

mRNA/cDNA for MIR3138 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3138 Gene

No ASD Table

Relevant External Links for MIR3138 Gene

GeneLoc Exon Structure for
MIR3138
ECgene alternative splicing isoforms for
MIR3138

Expression for MIR3138 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3138 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3138 Gene:

MIR3138
genes like me logo Genes that share expression patterns with MIR3138: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3138 Gene

Orthologs for MIR3138 Gene

Evolution for MIR3138 Gene

ENSEMBL:
Gene Tree for MIR3138 (if available)
TreeFam:
Gene Tree for MIR3138 (if available)

No data available for Orthologs for MIR3138 Gene

Paralogs for MIR3138 Gene

No data available for Paralogs for MIR3138 Gene

Variants for MIR3138 Gene

Sequence variations from dbSNP and Humsavar for MIR3138 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000977881 -- 10,079,387(-) C/T upstream_transcript_variant
rs1001928505 -- 10,080,660(-) C/T upstream_transcript_variant
rs1001999901 -- 10,079,455(-) T/C upstream_transcript_variant
rs1002382427 -- 10,080,516(-) A/T upstream_transcript_variant
rs1003626895 -- 10,078,668(-) G/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR3138 Gene

Variant ID Type Subtype PubMed ID
dgv5117n100 CNV gain 25217958
esv2752052 CNV gain 17911159
esv2759222 CNV gain+loss 17122850
esv3599589 CNV gain 21293372
esv3599598 CNV gain 21293372
nsv1005698 CNV gain 25217958
nsv1013487 CNV gain 25217958
nsv1014335 CNV gain 25217958
nsv428438 CNV gain 18775914
nsv469621 CNV loss 16826518
nsv829857 CNV gain 17160897

Additional Variant Information for MIR3138 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3138

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3138 Gene

Disorders for MIR3138 Gene

Additional Disease Information for MIR3138

No disorders were found for MIR3138 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3138 Gene

Publications for MIR3138 Gene

  1. MicroRNA expression profiles in pediatric dysembryoplastic neuroepithelial tumors. (PMID: 26698155) Braoudaki M … Kanavakis E (Medical oncology (Northwood, London, England) 2016) 3 58
  2. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
  3. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton CJ … Gunaratne PH (PloS one 2010) 3 58
  4. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3 58
  5. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR3138 Gene

Sources for MIR3138 Gene

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