Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR3129 Gene

Subcategory (RNA class) for MIR3129 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3129 Gene

  • MicroRNA 3129 2 3 5
  • Hsa-Mir-3129 3
  • Mir-3129 3

External Ids for MIR3129 Gene

Previous GeneCards Identifiers for MIR3129 Gene

  • GC02U902089
  • GC02M189997

Summaries for MIR3129 Gene

Entrez Gene Summary for MIR3129 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3129 Gene

MIR3129 (MicroRNA 3129) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3129 Gene

Genomics for MIR3129 Gene

Regulatory Elements for MIR3129 Gene

Enhancers for MIR3129 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G189128 1 Ensembl ENCODE dbSUPER 0.7 +2.7 2697 4.7 PRDM6 JUND ZNF384 ZNF18 COL5A2 LOC100420666 MIR3129 ENSG00000228073
GH02G189115 1.1 Ensembl ENCODE dbSUPER 0.4 +16.4 16429 2.2 ZFHX2 CBX5 SMARCA4 HLF MNT EGR2 COL5A2 LOC100420666 WDR75 MIR3129 ENSG00000228073
GH02G189142 1 ENCODE dbSUPER 0.4 -10.9 -10887 2.6 CTCF ZNF654 NR2F1 TRIM22 REST RAD21 KLF16 ZNF143 SMC3 NR2C1 COL5A2 LOC100420666 WDR75 MIR3129 GC02M189179 GC02M189180
GH02G189149 1 ENCODE dbSUPER 0.4 -18.9 -18931 5.0 PKNOX1 CEBPB CEBPG DPF2 FOXA1 ZNF217 ZNF707 JUND GATA3 ZNF791 COL5A2 WDR75 MIR3129 GC02M189180 GC02M189179
GH02G189162 1.1 Ensembl ENCODE dbSUPER 0.3 -31.2 -31162 3.2 CEBPB FOXP2 HNF4A ZBTB40 MAFK NR2F2 LOC100420666 COL5A2 WDR75 GC02M189179 GC02M189180 MIR3129
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3129 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3129 Gene

Chromosome:
2
Start:
189,133,036 bp from pter
End:
189,133,111 bp from pter
Size:
76 bases
Orientation:
Minus strand

Genomic View for MIR3129 Gene

Genes around MIR3129 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3129 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3129 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3129 Gene

ORGUL Member Location for MIR3129 Gene

ORGUL Member Location for MIR3129 gene

Proteins for MIR3129 Gene

Post-translational modifications for MIR3129 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3129 Gene

Domains & Families for MIR3129 Gene

Gene Families for MIR3129 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3129: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3129 Gene

Function for MIR3129 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3129 Gene

Localization for MIR3129 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3129 Gene

Pathways & Interactions for MIR3129 Gene

SuperPathways for MIR3129 Gene

No Data Available

Interacting Proteins for MIR3129 Gene

Gene Ontology (GO) - Biological Process for MIR3129 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3129 Gene

Drugs & Compounds for MIR3129 Gene

No Compound Related Data Available

Transcripts for MIR3129 Gene

mRNA/cDNA for MIR3129 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3129 Gene

No ASD Table

Relevant External Links for MIR3129 Gene

GeneLoc Exon Structure for
MIR3129
ECgene alternative splicing isoforms for
MIR3129

Expression for MIR3129 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3129 Gene:

MIR3129
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3129 Gene

Orthologs for MIR3129 Gene

Evolution for MIR3129 Gene

ENSEMBL:
Gene Tree for MIR3129 (if available)
TreeFam:
Gene Tree for MIR3129 (if available)

No data available for Orthologs for MIR3129 Gene

Paralogs for MIR3129 Gene

No data available for Paralogs for MIR3129 Gene

Variants for MIR3129 Gene

Sequence variations from dbSNP and Humsavar for MIR3129 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000342306 -- 189,135,009(+) TATTC(A/G)TATCT intron-variant, upstream-variant-2KB
rs1000500205 -- 189,135,106(+) TTTCT(A/G)TTCCT intron-variant, upstream-variant-2KB
rs1001570464 -- 189,133,601(+) GACTG(A/C)ATCTT intron-variant, upstream-variant-2KB
rs1002169692 -- 189,133,948(+) GAAAA(G/T)GACCA intron-variant, upstream-variant-2KB
rs1002767775 -- 189,132,552(+) CAAAT(A/G)ACCAA intron-variant, downstream-variant-500B

Relevant External Links for MIR3129 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3129

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3129 Gene

Disorders for MIR3129 Gene

Relevant External Links for MIR3129

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3129

No disorders were found for MIR3129 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3129 Gene

Publications for MIR3129 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  3. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  4. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3 64
  5. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3129 Gene

Sources for MIR3129 Gene

Content
Loading form....