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Aliases for MIR3128 Gene

Subcategory (RNA class) for MIR3128 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3128 Gene

  • MicroRNA 3128 2 3 5
  • Hsa-Mir-3128 3
  • Mir-3128 3

External Ids for MIR3128 Gene

Previous GeneCards Identifiers for MIR3128 Gene

  • GC02U902090
  • GC02M178120

Summaries for MIR3128 Gene

Entrez Gene Summary for MIR3128 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3128 Gene

MIR3128 (MicroRNA 3128) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3128 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3128 Gene

Genomics for MIR3128 Gene

Regulatory Elements for MIR3128 Gene

Enhancers for MIR3128 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H177250 2 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +1.9 1874 7 HDGF FOXA2 PKNOX1 MLX ARNT ARID4B SIN3A ZNF2 YY1 SLC30A9 HNRNPA3 RBM45 LOC100130691 NFE2L2 LOC105373754 MIR3128 DNAJC19P5
GH02H177237 2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +13.5 13502 9 HDGF PKNOX1 FOXA2 ARNT ARID4B FEZF1 ZNF2 YY1 SLC30A9 FOS NFE2L2 HNRNPA3 ENSG00000222043 ENSG00000229337 ENSG00000238295 ENSG00000237178 LOC100130691 LOC105373754 MIR3128 DNAJC19P5
GH02H177235 1 Ensembl ENCODE dbSUPER 0.4 +19.8 19810 2 ZNF121 SSRP1 CEBPG ZSCAN29 ATF7 ENSG00000229337 HNRNPA3 ENSG00000222043 NFE2L2 LOC100130691 LOC105373754 DNAJC19P5 MIR3128
GH02H177259 0.5 Ensembl 0.7 -3.2 -3191 0 PAF1 POLR2A ZBTB33 MIR3128 ENSG00000222043
GH02H177247 0.6 dbSUPER 0.4 +7.6 7557 1 ZFP64 ZBTB33 ZNF781 ZNF518A ZBTB20 ZNF697 HNRNPA3 ENSG00000229337 ENSG00000237178 ENSG00000238295 LOC105373754 MIR3128 DNAJC19P5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3128 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3128 Gene

Chromosome:
2
Start:
177,255,945 bp from pter
End:
177,256,010 bp from pter
Size:
66 bases
Orientation:
Minus strand

Genomic View for MIR3128 Gene

Genes around MIR3128 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3128 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3128 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3128 Gene

Proteins for MIR3128 Gene

Post-translational modifications for MIR3128 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3128 Gene

Domains & Families for MIR3128 Gene

Gene Families for MIR3128 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3128: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3128 Gene

Function for MIR3128 Gene

Animal Model Products

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR3128
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3128 Gene

Localization for MIR3128 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3128 Gene

Pathways & Interactions for MIR3128 Gene

SuperPathways for MIR3128 Gene

No Data Available

Interacting Proteins for MIR3128 Gene

Gene Ontology (GO) - Biological Process for MIR3128 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3128 Gene

Drugs & Compounds for MIR3128 Gene

No Compound Related Data Available

Transcripts for MIR3128 Gene

mRNA/cDNA for MIR3128 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR3128
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3128 Gene

No ASD Table

Relevant External Links for MIR3128 Gene

GeneLoc Exon Structure for
MIR3128
ECgene alternative splicing isoforms for
MIR3128

Expression for MIR3128 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3128 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3128 Gene:

MIR3128
genes like me logo Genes that share expression patterns with MIR3128: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3128 Gene

Orthologs for MIR3128 Gene

Evolution for MIR3128 Gene

ENSEMBL:
Gene Tree for MIR3128 (if available)
TreeFam:
Gene Tree for MIR3128 (if available)

No data available for Orthologs for MIR3128 Gene

Paralogs for MIR3128 Gene

No data available for Paralogs for MIR3128 Gene

Variants for MIR3128 Gene

Sequence variations from dbSNP and Humsavar for MIR3128 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000674106 -- 177,256,095(+) CACAA(C/T)AGCAA intron-variant, upstream-variant-2KB
rs1001107637 -- 177,256,462(+) ATTGA(A/G)GGTAC intron-variant, upstream-variant-2KB
rs1001273386 -- 177,255,641(+) TGCAC(C/T)TTCAA intron-variant, downstream-variant-500B
rs1002243033 -- 177,256,881(+) CTGTG(G/T)GGTGG intron-variant, upstream-variant-2KB
rs1003269571 -- 177,256,131(+) ACAAA(-/C)CAAAA intron-variant, upstream-variant-2KB

Relevant External Links for MIR3128 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3128

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3128 Gene

Disorders for MIR3128 Gene

Relevant External Links for MIR3128

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3128

No disorders were found for MIR3128 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3128 Gene

Publications for MIR3128 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 60
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3 60
  3. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3 60
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR3128 Gene

Sources for MIR3128 Gene

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