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Aliases for MIR3125 Gene

Subcategory (RNA class) for MIR3125 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3125 Gene

  • MicroRNA 3125 2 3 5
  • Hsa-Mir-3125 3
  • Mir-3125 3

External Ids for MIR3125 Gene

Previous GeneCards Identifiers for MIR3125 Gene

  • GC02U902120
  • GC02P012877

Summaries for MIR3125 Gene

Entrez Gene Summary for MIR3125 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3125 Gene

MIR3125 (MicroRNA 3125) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3125 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3125 Gene

Genomics for MIR3125 Gene

GeneHancer (GH) Regulatory Elements for MIR3125 Gene

Promoters and enhancers for MIR3125 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I012737 Enhancer 0.7 ENCODE dbSUPER 557.7 +0.9 937 0.8 BCOR ZFP36 ZMYM3 NR2F2 MIR3125 TRIB2 GC02M012766
GH02I012734 Enhancer 0.6 ENCODE dbSUPER 559.1 -1.8 -1754 2 RXRA RAD21 NR2F2 MIR3125 TRIB2
GH02I012714 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 6.7 -18.7 -18730 9.1 PKNOX1 ATF1 FOXA2 ARNT ZFP64 SIN3A ZNF2 ZNF48 YY1 GLIS2 TRIB2 MIR3125 ENSG00000261117
GH02I012726 Enhancer 1.1 Ensembl ENCODE dbSUPER 8 -9.3 -9332 2.9 PKNOX1 EBF1 BATF ZKSCAN1 RELA FOXK2 POLR2A ETV6 IKZF2 RUNX3 MIR3125 TRIB2
GH02I012732 Enhancer 0.7 ENCODE dbSUPER 9.6 -4.5 -4514 0.9 SCRT1 RXRA SCRT2 HNF4A RAD21 NR2F2 MIR3125 TRIB2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR3125 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3125 Gene

Genomic Locations for MIR3125 Gene
chr2:12,737,367-12,737,444
(GRCh38/hg38)
Size:
78 bases
Orientation:
Plus strand
chr2:12,877,493-12,877,570
(GRCh37/hg19)

Genomic View for MIR3125 Gene

Genes around MIR3125 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3125 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3125 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3125 Gene

Proteins for MIR3125 Gene

Post-translational modifications for MIR3125 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3125 Gene

Domains & Families for MIR3125 Gene

Gene Families for MIR3125 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3125: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3125 Gene

Function for MIR3125 Gene

Phenotypes From GWAS Catalog for MIR3125 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3125 Gene

Localization for MIR3125 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3125 Gene

Pathways & Interactions for MIR3125 Gene

SuperPathways for MIR3125 Gene

No Data Available

Interacting Proteins for MIR3125 Gene

Gene Ontology (GO) - Biological Process for MIR3125 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3125 Gene

Drugs & Compounds for MIR3125 Gene

No Compound Related Data Available

Transcripts for MIR3125 Gene

mRNA/cDNA for MIR3125 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3125 Gene

No ASD Table

Relevant External Links for MIR3125 Gene

GeneLoc Exon Structure for
MIR3125
ECgene alternative splicing isoforms for
MIR3125

Expression for MIR3125 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3125 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3125 Gene:

MIR3125
genes like me logo Genes that share expression patterns with MIR3125: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3125 Gene

Orthologs for MIR3125 Gene

Evolution for MIR3125 Gene

ENSEMBL:
Gene Tree for MIR3125 (if available)
TreeFam:
Gene Tree for MIR3125 (if available)

No data available for Orthologs for MIR3125 Gene

Paralogs for MIR3125 Gene

No data available for Paralogs for MIR3125 Gene

Variants for MIR3125 Gene

Sequence variations from dbSNP and Humsavar for MIR3125 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1001093733 -- 12,735,400(+) C/T upstream_transcript_variant
rs1003091805 -- 12,737,839(+) C/G downstream_transcript_variant
rs1004673500 -- 12,735,668(+) T/A upstream_transcript_variant
rs1005657167 -- 12,736,024(+) G/A/T upstream_transcript_variant
rs1005941814 -- 12,737,467(+) C/T downstream_transcript_variant

Additional Variant Information for MIR3125 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3125

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3125 Gene

Disorders for MIR3125 Gene

Additional Disease Information for MIR3125

No disorders were found for MIR3125 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3125 Gene

Publications for MIR3125 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
  2. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3 58
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR3125 Gene

Sources for MIR3125 Gene

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