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Aliases for MIR3125 Gene

Subcategory (RNA class) for MIR3125 Gene


Quality Score for this RNA gene is


Aliases for MIR3125 Gene

  • MicroRNA 3125 2 3 5
  • Hsa-Mir-3125 3
  • Mir-3125 3

External Ids for MIR3125 Gene

Previous GeneCards Identifiers for MIR3125 Gene

  • GC02U902120
  • GC02P012877

Summaries for MIR3125 Gene

Entrez Gene Summary for MIR3125 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3125 Gene

MIR3125 (MicroRNA 3125) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3125 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3125 Gene

Genomics for MIR3125 Gene

Regulatory Elements for MIR3125 Gene

Enhancers for MIR3125 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H012714 1.5 FANTOM5 ENCODE dbSUPER 6.7 -18.7 -18731 9.1 PKNOX1 ATF1 ARNT ZFP64 SIN3A ZNF2 YY1 GLIS2 ZNF143 ATF7 TRIB2 MIR3125
GH02H012726 1.2 Ensembl ENCODE dbSUPER 8 -9.3 -9332 2.9 PKNOX1 TBL1XR1 MAX BATF ZKSCAN1 RELA FOXK2 POLR2A EED ETV6 MIR3125 TRIB2
GH02H012732 0.8 ENCODE dbSUPER 9.6 -4.5 -4514 0.9 SCRT1 SCRT2 HNF4A RAD21 NR2F2 MIR3125 TRIB2
GH02H012817 1.3 FANTOM5 Ensembl ENCODE 5.5 +81.8 81842 2.9 HDAC1 JUN ETV1 BACH1 ZMYM3 CEBPG RAD21 POLR2A FOS NFE2 MIR3125 GC02M012766 GC02M012872
GH02H012734 0.7 ENCODE dbSUPER 9.1 -1.8 -1755 2 RAD21 NR2F2 MIR3125 TRIB2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3125 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3125 Gene

Genomic Locations for MIR3125 Gene
78 bases
Plus strand

Genomic View for MIR3125 Gene

Genes around MIR3125 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3125 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3125 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3125 Gene

Proteins for MIR3125 Gene

Post-translational modifications for MIR3125 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3125 Gene

Domains & Families for MIR3125 Gene

Gene Families for MIR3125 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3125: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3125 Gene

Function for MIR3125 Gene

Phenotypes From GWAS Catalog for MIR3125 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3125 Gene

Localization for MIR3125 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3125 Gene

Pathways & Interactions for MIR3125 Gene

SuperPathways for MIR3125 Gene

No Data Available

Interacting Proteins for MIR3125 Gene

Gene Ontology (GO) - Biological Process for MIR3125 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR3125 Gene

Drugs & Compounds for MIR3125 Gene

No Compound Related Data Available

Transcripts for MIR3125 Gene

mRNA/cDNA for MIR3125 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3125 Gene

No ASD Table

Relevant External Links for MIR3125 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR3125 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3125 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3125 Gene:

genes like me logo Genes that share expression patterns with MIR3125: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3125 Gene

Orthologs for MIR3125 Gene

Evolution for MIR3125 Gene

Gene Tree for MIR3125 (if available)
Gene Tree for MIR3125 (if available)

No data available for Orthologs for MIR3125 Gene

Paralogs for MIR3125 Gene

No data available for Paralogs for MIR3125 Gene

Variants for MIR3125 Gene

Sequence variations from dbSNP and Humsavar for MIR3125 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1001093733 -- 12,735,400(+) TACAG(C/T)GCACC intron-variant, upstream-variant-2KB
rs1003091805 -- 12,737,839(+) TGTGT(C/G)TATTT intron-variant, downstream-variant-500B
rs1004673500 -- 12,735,668(+) TGACA(A/T)CTGCC intron-variant, upstream-variant-2KB
rs1005657167 -- 12,736,024(+) CCAGG(A/G/T)TTAGT intron-variant, upstream-variant-2KB
rs1005941814 -- 12,737,467(+) CTTTT(C/T)ACCTC intron-variant, downstream-variant-500B

Relevant External Links for MIR3125 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3125 Gene

Disorders for MIR3125 Gene

Relevant External Links for MIR3125

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR3125 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3125 Gene

Publications for MIR3125 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 60
  2. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3 60
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR3125 Gene

Sources for MIR3125 Gene

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