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Aliases for MIR3125 Gene

Subcategory (RNA class) for MIR3125 Gene


Quality Score for this RNA gene is


Aliases for MIR3125 Gene

  • MicroRNA 3125 2 3 5
  • Hsa-Mir-3125 3
  • Mir-3125 3

External Ids for MIR3125 Gene

Previous GeneCards Identifiers for MIR3125 Gene

  • GC02U902120
  • GC02P012877

Summaries for MIR3125 Gene

Entrez Gene Summary for MIR3125 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3125 Gene

MIR3125 (MicroRNA 3125) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3125 Gene

Genomics for MIR3125 Gene

Regulatory Elements for MIR3125 Gene

Enhancers for MIR3125 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F012732 0.4 ENCODE 9.6 -4.5 -4514 0.9 SCRT1 SCRT2 NR2F2 MIR3125 TRIB2
GH02F012734 0.2 ENCODE 9.1 -1.8 -1755 2.0 NRF1 RAD21 NR2F2 MIR3125 TRIB2
GH02F012726 1 Ensembl ENCODE 8 -9.3 -9332 2.9 PKNOX1 TBL1XR1 MTA2 WRNIP1 TBX21 EP300 NR2F2 RELA ZKSCAN1 POLR2A MIR3125 TRIB2
GH02F012737 0.4 ENCODE 7.7 +0.9 938 0.8 BCOR ZNF263 ZMYM3 NR2F2 MIR3125 GC02M012766
GH02F012714 1 FANTOM5 ENCODE 6.6 -18.7 -18731 9.1 PKNOX1 ZFP64 SIN3A ZNF48 ZNF2 YY1 GLIS2 REST CBX8 SMARCA4 TRIB2 MIR3125
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR3125 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3125 Gene

12,737,367 bp from pter
12,737,444 bp from pter
78 bases
Plus strand

Genomic View for MIR3125 Gene

Genes around MIR3125 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3125 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3125 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3125 Gene

Proteins for MIR3125 Gene

Post-translational modifications for MIR3125 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3125 Gene

Domains & Families for MIR3125 Gene

Gene Families for MIR3125 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3125: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3125 Gene

Function for MIR3125 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3125 Gene

Localization for MIR3125 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3125 Gene

Pathways & Interactions for MIR3125 Gene

SuperPathways for MIR3125 Gene

No Data Available

Interacting Proteins for MIR3125 Gene

Gene Ontology (GO) - Biological Process for MIR3125 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR3125 Gene

Transcripts for MIR3125 Gene

mRNA/cDNA for MIR3125 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3125 Gene

No ASD Table

Relevant External Links for MIR3125 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR3125 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR3125 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3125 Gene:

genes like me logo Genes that share expression patterns with MIR3125: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3125 Gene

Orthologs for MIR3125 Gene

Evolution for MIR3125 Gene

Gene Tree for MIR3125 (if available)
Gene Tree for MIR3125 (if available)

No data available for Orthologs for MIR3125 Gene

Paralogs for MIR3125 Gene

No data available for Paralogs for MIR3125 Gene

Variants for MIR3125 Gene

Sequence variations from dbSNP and Humsavar for MIR3125 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs111625663 -- 12,736,897(+) GGATG(C/G)ACAGG intron-variant, upstream-variant-2KB
rs115536953 -- 12,736,398(+) GACTG(A/G)GCGAG intron-variant, upstream-variant-2KB
rs115940590 -- 12,737,202(+) CTGGG(C/T)CCTTT intron-variant, upstream-variant-2KB
rs116582407 -- 12,736,847(+) TACGA(C/T)ATCTC intron-variant, upstream-variant-2KB
rs11687168 -- 12,736,792(+) GATCA(A/T)CCCAA intron-variant, upstream-variant-2KB

Relevant External Links for MIR3125 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3125 Gene

Disorders for MIR3125 Gene

Relevant External Links for MIR3125

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR3125 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3125 Gene

Publications for MIR3125 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3125 Gene

Sources for MIR3125 Gene

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