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Aliases for MIR3122 Gene

Subcategory (RNA class) for MIR3122 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3122 Gene

  • MicroRNA 3122 2 3 5
  • Hsa-Mir-3122 3
  • Mir-3122 3

External Ids for MIR3122 Gene

Previous GeneCards Identifiers for MIR3122 Gene

  • GC01U903076
  • GC01P212250

Summaries for MIR3122 Gene

Entrez Gene Summary for MIR3122 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3122 Gene

MIR3122 (MicroRNA 3122) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3122 Gene

Genomics for MIR3122 Gene

Regulatory Elements for MIR3122 Gene

Enhancers for MIR3122 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G212087 1.5 FANTOM5 Ensembl ENCODE 0.4 +11.0 10957 1.3 FOXA2 PKNOX1 ARNT FEZF1 ZNF2 YY1 TCF12 ZNF766 GATA2 TSHZ1 INTS7 DTL LOC102723727 PPP2R5A GC01P212093 MIR3122
GH01G212077 0.7 ENCODE 0.7 -0.4 -400 0.2 PKNOX1 RNF2 JUN MAFG FOXA1 SREBF1 FOSL1 JUND GATA3 ZNF316 INTS7 DTL TMEM206 MIR3122 RPL21P28
GH01G212083 0.7 FANTOM5 0.4 +6.2 6160 0.3 ZNF639 ATF3 MAX SMAD4 HNF4A PRDM1 ZNF644 RAD21 ZBTB26 YY1 LINC00467 INTS7 DTL MIR3122 GC01P212093
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3122 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3122 Gene

Chromosome:
1
Start:
212,077,613 bp from pter
End:
212,077,685 bp from pter
Size:
73 bases
Orientation:
Plus strand

Genomic View for MIR3122 Gene

Genes around MIR3122 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3122 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3122 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3122 Gene

Proteins for MIR3122 Gene

Post-translational modifications for MIR3122 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3122 Gene

Domains & Families for MIR3122 Gene

Gene Families for MIR3122 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3122: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3122 Gene

Function for MIR3122 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3122 Gene

Localization for MIR3122 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3122 Gene

Pathways & Interactions for MIR3122 Gene

SuperPathways for MIR3122 Gene

No Data Available

Interacting Proteins for MIR3122 Gene

Gene Ontology (GO) - Biological Process for MIR3122 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3122 Gene

Transcripts for MIR3122 Gene

mRNA/cDNA for MIR3122 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3122 Gene

No ASD Table

Relevant External Links for MIR3122 Gene

GeneLoc Exon Structure for
MIR3122
ECgene alternative splicing isoforms for
MIR3122

Expression for MIR3122 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3122 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3122 Gene:

MIR3122
genes like me logo Genes that share expression patterns with MIR3122: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3122 Gene

Orthologs for MIR3122 Gene

Evolution for MIR3122 Gene

ENSEMBL:
Gene Tree for MIR3122 (if available)
TreeFam:
Gene Tree for MIR3122 (if available)

No data available for Orthologs for MIR3122 Gene

Paralogs for MIR3122 Gene

No data available for Paralogs for MIR3122 Gene

Variants for MIR3122 Gene

Sequence variations from dbSNP and Humsavar for MIR3122 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000713170 -- 212,077,863(+) AATGC(C/T)AGTCT intron-variant, downstream-variant-500B
rs1002827415 -- 212,077,758(+) CTGAA(G/T)ATATA intron-variant, downstream-variant-500B
rs1002839086 -- 212,077,496(+) AAAAA(A/G)TGTTT intron-variant, upstream-variant-2KB
rs1004954641 -- 212,077,143(+) CAGAG(C/T)CTCAG intron-variant, upstream-variant-2KB
rs1007003316 -- 212,076,559(+) ATTAA(A/C)AAGCT intron-variant, upstream-variant-2KB

Relevant External Links for MIR3122 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3122

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3122 Gene

Disorders for MIR3122 Gene

Relevant External Links for MIR3122

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3122

No disorders were found for MIR3122 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3122 Gene

Publications for MIR3122 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3122 Gene

Sources for MIR3122 Gene

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