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Aliases for MIR3116-2 Gene

Subcategory (RNA class) for MIR3116-2 Gene


Quality Score for this RNA gene is


Aliases for MIR3116-2 Gene

  • MicroRNA 3116-2 2 3 5
  • Hsa-Mir-3116-2 3

External Ids for MIR3116-2 Gene

Previous GeneCards Identifiers for MIR3116-2 Gene

  • GC01U903066
  • GC01M062544

Summaries for MIR3116-2 Gene

Entrez Gene Summary for MIR3116-2 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3116-2 Gene

MIR3116-2 (MicroRNA 3116-2) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3116-2 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3116-2 Gene

Genomics for MIR3116-2 Gene

GeneHancer (GH) Regulatory Elements for MIR3116-2 Gene

Promoters and enhancers for MIR3116-2 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I062090 Enhancer 0.4 ENCODE 0.4 -11.3 -11288 0.2 GATA3 TCF7L2 PATJ MIR3116-2 GC01M062100
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR3116-2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3116-2 Gene

Genomic Locations for MIR3116-2 Gene
68 bases
Minus strand

Genomic View for MIR3116-2 Gene

Genes around MIR3116-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3116-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3116-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3116-2 Gene

Proteins for MIR3116-2 Gene

Post-translational modifications for MIR3116-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3116-2 Gene

Domains & Families for MIR3116-2 Gene

Gene Families for MIR3116-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3116-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3116-2 Gene

Function for MIR3116-2 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3116-2 Gene

Localization for MIR3116-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3116-2 Gene

Pathways & Interactions for MIR3116-2 Gene

SuperPathways for MIR3116-2 Gene

No Data Available

Interacting Proteins for MIR3116-2 Gene

Gene Ontology (GO) - Biological Process for MIR3116-2 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR3116-2 Gene

Drugs & Compounds for MIR3116-2 Gene

No Compound Related Data Available

Transcripts for MIR3116-2 Gene

mRNA/cDNA for MIR3116-2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3116-2 Gene

No ASD Table

Relevant External Links for MIR3116-2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR3116-2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3116-2 Gene

Orthologs for MIR3116-2 Gene

Evolution for MIR3116-2 Gene

Gene Tree for MIR3116-2 (if available)
Gene Tree for MIR3116-2 (if available)

No data available for Orthologs for MIR3116-2 Gene

Paralogs for MIR3116-2 Gene

No data available for Paralogs for MIR3116-2 Gene

Variants for MIR3116-2 Gene

Sequence variations from dbSNP and Humsavar for MIR3116-2 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1001023649 -- 62,080,469(-) T/A upstream_transcript_variant
rs1003180673 -- 62,080,000(-) C/A upstream_transcript_variant
rs1003383707 -- 62,080,373(-) C/T upstream_transcript_variant
rs1003501916 -- 62,078,586(-) C/T downstream_transcript_variant
rs1004033161 -- 62,079,935(-) G/A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR3116-2 Gene

Variant ID Type Subtype PubMed ID
nsv1001667 CNV loss 25217958
nsv546417 CNV loss 21841781

Additional Variant Information for MIR3116-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3116-2 Gene

Disorders for MIR3116-2 Gene

Additional Disease Information for MIR3116-2

No disorders were found for MIR3116-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3116-2 Gene

Publications for MIR3116-2 Gene

  1. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton CJ … Gunaratne PH (PloS one 2010) 3 58
  2. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3 58
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR3116-2 Gene

Sources for MIR3116-2 Gene

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