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Aliases for MIR30D Gene

Subcategory (RNA class) for MIR30D Gene

miRNA

Quality Score for this RNA gene is

8.2

Aliases for MIR30D Gene

  • MicroRNA 30d 2 3
  • Hsa-Mir-30d 3
  • MIRN30D 3

External Ids for MIR30D Gene

Previous Symbols for MIR30D Gene

  • MIRN30D

Summaries for MIR30D Gene

Entrez Gene Summary for MIR30D Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR30D Gene

MIR30D (MicroRNA 30d) is an RNA Gene, and belongs to the miRNA class. Among its related pathways are MicroRNAs in cancer.

fRNAdb sequence ontologies for MIR30D Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for MIR30D

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR30D Gene

Genomics for MIR30D Gene

Genomic Location for MIR30D Gene

Start:
134,804,876 bp from pter
End:
134,804,945 bp from pter
Size:
70 bases
Orientation:
Minus strand

Genomic View for MIR30D Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR30D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR30D Gene

ORGUL Member Location for MIR30D Gene

ORGUL Member Location for MIR30D gene

No data available for Regulatory Elements for MIR30D Gene

Proteins for MIR30D Gene

Post-translational modifications for MIR30D Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR30D Gene

Domains for MIR30D Gene

Gene Families for MIR30D Gene

HGNC:
  • MIR :ncRNAs / Micro RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR30D: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR30D Gene

Function for MIR30D Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR30D Gene

Localization for MIR30D Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR30D Gene

Pathways for MIR30D Gene

SuperPathways for MIR30D Gene

Superpath Contained pathways
1 MicroRNAs in cancer
genes like me logo Genes that share pathways with MIR30D: view

Pathways by source for MIR30D Gene

1 KEGG pathway for MIR30D Gene

Interacting Proteins for MIR30D Gene

Gene Ontology (GO) - Biological Process for MIR30D Gene

None

Transcripts for MIR30D Gene

fRNAdb Secondary structures for MIR30D Gene

  • hsa-mir-30d_MI0000255_Homo_sapiens_miR-30d_stem-loop_hairpin

mRNA/cDNA for MIR30D Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR30D Gene

No ASD Table

Relevant External Links for MIR30D Gene

GeneLoc Exon Structure for
MIR30D
ECgene alternative splicing isoforms for
MIR30D

Expression for MIR30D Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for MIR30D Gene

Orthologs for MIR30D Gene

This gene was present in the common ancestor of chordates.

Orthologs for MIR30D Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-30d 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia bta-mir-30d 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia cfa-mir-30d 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mir30d 36
  • 79 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia oan-mir-30d 36
  • 45 (a)
OneToOne
chicken
(Gallus gallus)
Aves gga-mir-30d 36
  • 89 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia aca-mir-30d 36
  • 63 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii dre-mir-30a 36
  • 67 (a)
OneToOne
Species with no ortholog for MIR30D:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MIR30D Gene

ENSEMBL:
Gene Tree for MIR30D (if available)
TreeFam:
Gene Tree for MIR30D (if available)

Paralogs for MIR30D Gene

No data available for Paralogs for MIR30D Gene

Variants for MIR30D Gene

Sequence variations from dbSNP and Humsavar for MIR30D Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs741903 -- 134,805,263(-) AACTC(C/T)AGGGA upstream-variant-2KB
rs760342 -- 134,804,405(-) GTCCT(C/T)TTAGC downstream-variant-500B
rs1014598 -- 134,806,404(+) TTGAA(A/G)AAAAA upstream-variant-2KB
rs3115725 -- 134,806,926(-) TTTAG(C/G)TTCAG upstream-variant-2KB
rs3115737 -- 134,805,757(-) gcgat(C/T)taccc upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR30D Gene

Variant ID Type Subtype PubMed ID
nsv891474 CNV Gain 21882294

Relevant External Links for MIR30D Gene

HapMap Linkage Disequilibrium report
MIR30D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MIR30D Gene

Disorders for MIR30D Gene

No disorders were found for MIR30D Gene.

No data available for UniProtKB/Swiss-Prot for MIR30D Gene

Publications for MIR30D Gene

  1. Identification of tissue-specific microRNAs from mouse. (PMID: 12007417) Lagos-Quintana M. … Tuschl T. (Curr. Biol. 2002) 3
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  3. A mammalian microRNA expression atlas based on small RNA library sequencing. (PMID: 17604727) Landgraf P. … Tuschl T. (Cell 2007) 3
  4. Patterns of known and novel small RNAs in human cervical cancer. (PMID: 17616659) Lui W.O. … Fire A. (Cancer Res. 2007) 3
  5. Small RNAs analysis in CLL reveals a deregulation of miRNA expression and novel miRNA candidates of putative relevance in CLL pathogenesis. (PMID: 17989717) Marton S. … Cayota A. (Leukemia 2008) 3

Products for MIR30D Gene

Sources for MIR30D Gene

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