Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR30C2 Gene

Subcategory (RNA class) for MIR30C2 Gene

miRNA

Quality Score for this RNA gene is

18

Aliases for MIR30C2 Gene

  • MicroRNA 30c-2 2 3 5
  • Hsa-Mir-30c-2 3
  • Mir-30c-2 3
  • MIRN30C2 3
  • MiR-30c 3

External Ids for MIR30C2 Gene

Previous HGNC Symbols for MIR30C2 Gene

  • MIRN30C2

Previous GeneCards Identifiers for MIR30C2 Gene

  • GC06M072146
  • GC06M072086
  • GC06M071380
  • GC06M071381

Summaries for MIR30C2 Gene

Entrez Gene Summary for MIR30C2 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR30C2 Gene

MIR30C2 (MicroRNA 30c-2) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are miRNA targets in ECM and membrane receptors and Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins..

fRNAdb sequence ontologies for MIR30C2 Gene

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

View fRNAdb secondary structures for MIR30C2

Additional gene information for MIR30C2 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR30C2 Gene

Genomics for MIR30C2 Gene

Regulatory Elements for MIR30C2 Gene

Enhancers for MIR30C2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H071400 1.4 Ensembl ENCODE dbSUPER 10.5 -30.1 -30131 13 TBP PKNOX1 KLF17 SIN3A FEZF1 BRCA1 ZBTB40 RFX5 YY1 GLIS2 MIR30C2 ENSG00000230597 ENSG00000232295 RIMS1 LINC00472 GC06P071406 ENSG00000269966
GH06H071375 0.4 ENCODE 0.7 +0.8 838 1 SOX13 ENSG00000279312 MIR30C2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR30C2 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR30C2 Gene

Chromosome:
6
Start:
71,376,960 bp from pter
End:
71,377,031 bp from pter
Size:
72 bases
Orientation:
Minus strand

Genomic View for MIR30C2 Gene

Genes around MIR30C2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR30C2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR30C2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR30C2 Gene

ORGUL Member Location for MIR30C2 Gene

ORGUL Member Location for MIR30C2 gene

Proteins for MIR30C2 Gene

Post-translational modifications for MIR30C2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR30C2 Gene

Domains & Families for MIR30C2 Gene

Gene Families for MIR30C2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR30C2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR30C2 Gene

Function for MIR30C2 Gene

Gene Ontology (GO) - Molecular Function for MIR30C2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA 23749231
genes like me logo Genes that share ontologies with MIR30C2: view

Animal Model Products

CRISPR Products

miRNA for MIR30C2 Gene

miRTarBase miRNAs that target MIR30C2

Clone Products

  • Applied Biological Materials Clones for MIR30C2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MIR30C2 Gene

Localization for MIR30C2 Gene

Gene Ontology (GO) - Cellular Components for MIR30C2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 26646931
genes like me logo Genes that share ontologies with MIR30C2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for MIR30C2 Gene

Pathways & Interactions for MIR30C2 Gene

genes like me logo Genes that share pathways with MIR30C2: view

Pathways by source for MIR30C2 Gene

2 BioSystems pathways for MIR30C2 Gene
1 KEGG pathway for MIR30C2 Gene

Interacting Proteins for MIR30C2 Gene

Gene Ontology (GO) - Biological Process for MIR30C2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0010868 negative regulation of triglyceride biosynthetic process IDA 23749231
GO:0035195 gene silencing by miRNA IDA 23749231
GO:0045717 negative regulation of fatty acid biosynthetic process IDA 23749231
GO:0050709 negative regulation of protein secretion IDA 23749231
GO:0071072 negative regulation of phospholipid biosynthetic process IDA 23749231
genes like me logo Genes that share ontologies with MIR30C2: view

No data available for SIGNOR curated interactions for MIR30C2 Gene

Drugs & Compounds for MIR30C2 Gene

No Compound Related Data Available

Transcripts for MIR30C2 Gene

fRNAdb Secondary structures for MIR30C2 Gene

  • hsa-miR-30c-5p_MIMAT0000244_Homo_sapiens_miR-30c-5p_mature

mRNA/cDNA for MIR30C2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for MIR30C2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MIR30C2 Gene

No ASD Table

Relevant External Links for MIR30C2 Gene

GeneLoc Exon Structure for
MIR30C2
ECgene alternative splicing isoforms for
MIR30C2

Expression for MIR30C2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR30C2 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR30C2 Gene:

MIR30C2
genes like me logo Genes that share expression patterns with MIR30C2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR30C2 Gene

Orthologs for MIR30C2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MIR30C2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-30c-2 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia cfa-mir-30c-2 34
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mir30c-2 34
  • 82 (a)
OneToOne
cow
(Bos Taurus)
Mammalia bta-mir-30f 34
  • 80 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia mdo-mir-30c-1 34
  • 60 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia oan-mir-30c-2 34
  • 52 (a)
OneToOne
chicken
(Gallus gallus)
Aves gga-mir-30c-2 34
  • 94 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia aca-mir-30c 34
  • 53 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii dre-mir-30c 34
  • 63 (a)
OneToMany
Species where no ortholog for MIR30C2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MIR30C2 Gene

ENSEMBL:
Gene Tree for MIR30C2 (if available)
TreeFam:
Gene Tree for MIR30C2 (if available)

Paralogs for MIR30C2 Gene

No data available for Paralogs for MIR30C2 Gene

Variants for MIR30C2 Gene

Sequence variations from dbSNP and Humsavar for MIR30C2 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000648087 -- 71,377,539(+) TACCT(C/T)AATGA upstream-variant-2KB
rs1002154172 -- 71,378,612(+) TATAA(A/G)GACAA upstream-variant-2KB
rs1002157421 -- 71,377,963(+) CAATT(A/G)TGACT upstream-variant-2KB
rs1003812193 -- 71,377,134(+) GATCA(C/G)AAAAG upstream-variant-2KB
rs1005400228 -- 71,378,262(+) AGAGA(A/G)AGAAA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR30C2 Gene

Variant ID Type Subtype PubMed ID
nsv499808 OTHER inversion 21111241
nsv603640 CNV gain 21841781
nsv7382 OTHER inversion 18451855

Relevant External Links for MIR30C2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR30C2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR30C2 Gene

Disorders for MIR30C2 Gene

Relevant External Links for MIR30C2

Genetic Association Database (GAD)
MIR30C2
Human Genome Epidemiology (HuGE) Navigator
MIR30C2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR30C2

No disorders were found for MIR30C2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR30C2 Gene

Publications for MIR30C2 Gene

  1. Novel genetic variants in microRNA genes and familial breast cancer. (PMID: 19048628) Shen J … Zhao H (International journal of cancer 2009) 3 45 60
  2. New human and mouse microRNA genes found by homology search. (PMID: 15634332) Weber MJ (The FEBS journal 2005) 1 3 60
  3. Identification of human fetal liver miRNAs by a novel method. (PMID: 15978578) Fu H … Zheng X (FEBS letters 2005) 1 3 60
  4. Altered expression profiles of microRNAs during TPA-induced differentiation of HL-60 cells. (PMID: 15325244) Kasashima K … Kozu T (Biochemical and biophysical research communications 2004) 1 3 60
  5. Identification of tissue-specific microRNAs from mouse. (PMID: 12007417) Lagos-Quintana M … Tuschl T (Current biology : CB 2002) 1 3 60

Products for MIR30C2 Gene

Sources for MIR30C2 Gene

Content
Loading form....