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MIR30B Gene

RNA gene   GIFtS: 26
GCID: GC08M135884

MicroRNA 30b


(Previous symbol: MIRN30B)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Subcategory (RNA class): miRNA

Quality score for this RNA gene is 8.2

Aliases
MicroRNA 30b1 2
MIRN30B1 2
mir-30b9

External Ids:    HGNC: 316251   Entrez Gene: 4070302   Ensembl: ENSG000002075827   
ORGUL members:    fRNAdb10:FR124837 FR124837 FR115824      
miRBase:MI0000441 MI0002503 MI0002502 MI0002508 MI0002506 see all 7    
RNAdb15:EVF25278    

Export aliases for MIR30B gene to outside databases


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MIR30B Gene:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of
gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are
transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can
be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme
to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the
cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The
mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through
imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of
the target mRNA. The RefSeq represents the predicted microRNA stem-loop. (provided by RefSeq, Sep 2009)

GeneCards Summary for MIR30B Gene:
MIR30B (microRNA 30b) is an RNA gene, and is affiliated with the miRNA class. Diseases associated with MIR30B include cervical cancer, and cervicitis.



fRNAdb sequence ontologies for MIR30B - the ORGUL cluster for this gene includes several descriptions:
pre_miRNA - The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.
nc_conserved_region - Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for MIR30B

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for MIR30B
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for MIR30B

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MIR30B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8q24.22   Ensembl cytogenetic band:  8q24.22   HGNC cytogenetic band: 8q24.22

MIR30B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIR30B gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08M135884:  view genomic region (via miRBase)     (about GC identifiers)

Start:
135,812,763 bp from pter      End:
135,812,850 bp from pter
Size:
88 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
MIR: ncRNAs / Micro RNAs

  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for MIR30B About    
See pathways by source

SuperPathContained pathways About
1MicroRNAs in cancer
MicroRNAs in cancer

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways



1 Kegg Pathway  (Kegg details for MIR30B):
    MicroRNAs in cancer


MIR30B for pathways           About GeneDecksing

    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MIR30B
Interactions:

    Search GeneGlobe Interaction Network for MIR30B

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for MIR30B



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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2 fRNAdb Secondary structures:


1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000384850(miRNA)
miRNA
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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Expression evidence for MIR30B:miRBase

See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --


MIR30B expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 
 Endothelium (Cardiovascular System)    fully expand to see all 2 entries
         Peripheral blood-derived endothelial progenitor cells
MIR30B Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
    Custom PCR Arrays for MIR30B
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In Situ
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for MIR30B gene from Selected species (see all 9)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chicken
(Gallus gallus)
Aves gga-mir-30b6
gga-mir-30b
85(a)
1 ↔ 1
2(142225959-142226045) ENSGALG00000018291
lizard
(Anolis carolinensis)
Reptilia aca-mir-30b6
aca-mir-30b
86(a)
1 ↔ 1
4(1747975-1748062)
zebrafish
(Danio rerio)
Actinopterygii dre-mir-30b6
dre-mir-30b
61(a)
many ↔ many
16(27581005-27581092)
        Species with no ortholog for MIR30B

ENSEMBL Gene Tree for MIR30B (if available)
TreeFam Gene Tree for MIR30B (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MIR30B (see all 75)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 8 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1848234211,2
--135812302(+) GGAGTC/TCAGAT 1 -- ds50010--------
rs1512692821,2
--135812351(+) AGCACA/GCTGCA 1 -- ds50010--------
rs74601211,2
C,F,H--135812416(+) CCAGAG/ACCTTA 1 -- ds500119Minor allele frequency- A:0.06NA NS EA CSA WA 2035
rs1903014301,2
--135812422(+) CCTTAC/TGTCAT 1 -- ds50010--------
rs1379574191,2
C--135812493(+) AGGAA-/TTTT  
 AATAAAT
TTTTA
1 -- ds50010--------
rs733590541,2
C,F--135812524(+) CCTCTA/GTAAGC 1 -- ds50013Minor allele frequency- G:0.11WA NA 240
rs100954831,2
C,F,A,H--135812548(+) GTTTTA/CACTAC 1 -- ds500120Minor allele frequency- C:0.14NS EA NA WA 2478
rs1394384871,2
C--135812609(+) TAGAT-/CCCTGC 1 -- ds50010--------
rs1820675711,2
--135812619(+) CCAGCC/TAGACA 1 -- ds50010--------
rs1114246171,2
C,F--135812836(-) CAGTTC/TATGTA 1 -- nc-transcript-variant1Minor allele frequency- T:0.00EA 1694

HapMap Linkage Disequilibrium report for MIR30B (135812763 - 135812850 bp)

Structural Variations
     Database of Genomic Variants (DGV) 1 variation for MIR30B:    About this table    
Variant IDTypeSubtypePubMed ID
nsv891474CNV Gain21882294

Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing MIR30B
DNA2.0 Custom Variant and Variant Library Synthesis for MIR30B

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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4 diseases for MIR30B:    
About MalaCards
cervical cancer    cervicitis    schizophrenia    lung cancer


MIR30B for disorders           About GeneDecksing

Genetic Association Database (GAD): MIR30B
Human Genome Epidemiology (HuGE) Navigator: MIR30B (2 documents)

Export disorders for MIR30B gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MIR30B gene, integrated from 10 sources (see all 19):
(articles sorted by number of sources associating them with MIR30B)
    Utopia: connect your pdf to the dynamic
world of online information

  1. MicroRNAs and target site screening reveals a pre-microRNA-30e variant associated with schizophrenia. (PubMed id 20347265)1, 4 Xu Y....Liu P. (Schizophr. Res. 2010)
  2. Effect of miR-21 and miR-30b/c on TRAIL-induced apoptosis in glioma cells. (PubMed id 22964638)1 Quintavalle C....Condorelli G. (Oncogene 2013)
  3. Novel small RNA expression libraries uncover hsa-miR-30b and hsa-miR-30c as important factors in anoikis resistance. (PubMed id 24129493)1 Moreno-Mateos M.A....Pintor-Toro J.A. (RNA 2013)
  4. ADAR1 regulates ARHGAP26 gene expression through RNA editing by disrupting miR-30b-3p and miR-573 binding. (PubMed id 24067935)1 Wang Q....Wang L. (RNA 2013)
  5. Adverse prognostic value of MYBL2 overexpression and association with microRNA-30 family in acute myeloid leukemia patients. (PubMed id 24199710)1 Fuster O....BarragA!n E. (Leuk. Res. 2013)
  6. Alteration of circulating miRNAs in SSc: miR-30b regulates the expression of PDGF receptor I^. (PubMed id 23893664)1 Tanaka S....Nakajima H. (Rheumatology (Oxford) 2013)
  7. MicroRNA-30b-mediated regulation of catalase expression in human ARPE-19 cells. (PubMed id 22880027)1 Haque R....Kim H. (PLoS ONE 2012)
  8. Respiratory syncytial virus regulates human microRNAs by using mechanisms involving beta interferon and NF-I_B. (PubMed id 23249809)1 Thornburg N.J....Crowe J.E. (MBio 2012)
  9. Compromised autophagy by MIR30B benefits the intracellular survival of Helicobacter pylori. (PubMed id 22647547)1 Tang B....Mao X.H. (Autophagy 2012)
  10. Genetic polymorphisms in the precursor MicroRNA flanking region and non-small cell lung cancer survival. (PubMed id 20889907)1 Hu Z....Shen H. (Am. J. Respir. Crit. Care Med. 2011)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 407030 HGNC: 31625 Ensembl:ENSG00000207582 miRBase: hsa-mir-30b euGenes: HUgn407030
ECgene: MIR30B Kegg: 407030 H-InvDB: MIR30B

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MIR30B Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MIR30B gene:
Search GeneIP for patents involving MIR30B

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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