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Aliases for MIR30A Gene

Subcategory (RNA class) for MIR30A Gene

miRNA

Quality Score for this RNA gene is

14.2

Aliases for MIR30A Gene

  • MicroRNA 30a 2 3 5
  • Hsa-Mir-30a 3
  • Mir-30a 3
  • MIRN30A 3

External Ids for MIR30A Gene

Previous HGNC Symbols for MIR30A Gene

  • MIRN30A

Previous GeneCards Identifiers for MIR30A Gene

  • GC06M072172
  • GC06M072113

Summaries for MIR30A Gene

Entrez Gene Summary for MIR30A Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR30A Gene

MIR30A (MicroRNA 30a) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are Parkinsons Disease Pathway and MicroRNAs in cancer.

fRNAdb sequence ontologies for MIR30A Gene - the ORGUL cluster for this gene includes several descriptions:

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for MIR30A

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR30A Gene

Genomics for MIR30A Gene

Regulatory Elements for MIR30A Gene

Enhancers for MIR30A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G071476 1 Ensembl ENCODE 10.9 -75.5 -75460 4.6 TBP JUN RFX5 ZNF664 GATA2 RCOR1 FOS BHLHE40 CEBPB USF2 MIR30A OGFRL1 LOC105377853 GC06P071540
GH06G071365 1 Ensembl ENCODE 10.4 +36.6 36552 2.3 PKNOX1 ZSCAN4 BMI1 RELA ARID3A SCRT2 FOS ZSCAN29 RELB IKZF2 MIR30A GC06M071383 GC06P071361
GH06G071467 0.9 Ensembl ENCODE 11.3 -65.4 -65412 2.3 BHLHE40 MNT JUND ZFHX2 NFYB PRDM10 FOS PRDM1 EGR2 MIR30A ENSG00000232295 LOC105377853 GC06P071468
GH06G071489 0.9 Ensembl ENCODE 11.1 -86.3 -86263 1.5 JUN ZNF384 DPF2 ATF2 ZNF217 JUND GATA3 CTBP1 GATA2 FOS MIR30A RIMS1 LOC105377853 GC06P071540
GH06G071495 0.8 Ensembl ENCODE 11.3 -92.6 -92597 1.2 ARID3A BHLHE40 HLF EBF1 MIR30A RIMS1 LOC105377853 GC06P071540
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR30A on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR30A Gene

Chromosome:
6
Start:
71,403,551 bp from pter
End:
71,403,621 bp from pter
Size:
71 bases
Orientation:
Minus strand

Genomic View for MIR30A Gene

Genes around MIR30A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR30A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR30A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR30A Gene

ORGUL Member Location for MIR30A Gene

ORGUL Member Location for MIR30A gene

Proteins for MIR30A Gene

Post-translational modifications for MIR30A Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR30A Gene

Domains & Families for MIR30A Gene

Gene Families for MIR30A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR30A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR30A Gene

Function for MIR30A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR30A Gene

Localization for MIR30A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR30A Gene

Pathways & Interactions for MIR30A Gene

genes like me logo Genes that share pathways with MIR30A: view

Pathways by source for MIR30A Gene

1 BioSystems pathway for MIR30A Gene
1 KEGG pathway for MIR30A Gene

Interacting Proteins for MIR30A Gene

Gene Ontology (GO) - Biological Process for MIR30A Gene

None

No data available for SIGNOR curated interactions for MIR30A Gene

Drugs & Compounds for MIR30A Gene

No Compound Related Data Available

Transcripts for MIR30A Gene

fRNAdb Secondary structures for MIR30A Gene

  • FR207193

mRNA/cDNA for MIR30A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR30A Gene

No ASD Table

Relevant External Links for MIR30A Gene

GeneLoc Exon Structure for
MIR30A
ECgene alternative splicing isoforms for
MIR30A

Expression for MIR30A Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR30A Gene:

MIR30A
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR30A Gene

Orthologs for MIR30A Gene

This gene was present in the common ancestor of chordates.

Orthologs for MIR30A Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia cfa-mir-30a 35
  • 100 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-30a 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia bta-mir-30a 35
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia mdo-mir-30a 35
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mir30a 35
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia oan-mir-30a 35
  • 47 (a)
OneToOne
chicken
(Gallus gallus)
Aves gga-mir-30a 35
  • 82 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia aca-mir-30a 35
  • 47 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii dre-mir-30e-2 35
  • 69 (a)
OneToOne
Species where no ortholog for MIR30A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MIR30A Gene

ENSEMBL:
Gene Tree for MIR30A (if available)
TreeFam:
Gene Tree for MIR30A (if available)

Paralogs for MIR30A Gene

No data available for Paralogs for MIR30A Gene

Variants for MIR30A Gene

Sequence variations from dbSNP and Humsavar for MIR30A Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1002209767 -- 71,405,045(+) TTACA(C/T)CCTGG upstream-variant-2KB
rs1002503005 -- 71,404,039(+) ACTGC(A/G)GTTGA upstream-variant-2KB
rs1004577200 -- 71,403,797(+) TCATG(A/G)ATGTC upstream-variant-2KB
rs1005915532 -- 71,404,341(+) ATTTG(A/T)ATGTT upstream-variant-2KB
rs1006570692 -- 71,404,145(+) CACTT(A/T)TGCTC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR30A Gene

Variant ID Type Subtype PubMed ID
nsv499808 OTHER inversion 21111241
nsv603640 CNV gain 21841781
nsv7382 OTHER inversion 18451855
nsv830684 CNV gain 17160897

Relevant External Links for MIR30A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR30A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR30A Gene

Disorders for MIR30A Gene

Relevant External Links for MIR30A

Genetic Association Database (GAD)
MIR30A
Human Genome Epidemiology (HuGE) Navigator
MIR30A
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR30A

No disorders were found for MIR30A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR30A Gene

Publications for MIR30A Gene

  1. Genetic variation in MicroRNA genes and risk of oral premalignant lesions. (PMID: 19851984) Clague J. … Wu X. (Mol. Carcinog. 2010) 3 46 64
  2. Genetic variations in microRNA-related genes are associated with survival and recurrence in patients with renal cell carcinoma. (PMID: 20732906) Lin J. … Wu X. (Carcinogenesis 2010) 3 46 64
  3. Genetic variations in microRNA-related genes are novel susceptibility loci for esophageal cancer risk. (PMID: 19138993) Ye Y. … Wu X. (Cancer Prev Res (Phila) 2008) 3 46 64
  4. MicroRNA-30a-5p suppresses epithelial-mesenchymal transition by targeting profilin-2 in high invasive non-small cell lung cancer cell lines. (PMID: 28405690) Yan J. … Gao Y. (Oncol. Rep. 2017) 3 64
  5. miR-30a as Potential Therapeutics by Targeting TET1 through Regulation of Drp-1 Promoter Hydroxymethylation in Idiopathic Pulmonary Fibrosis. (PMID: 28294974) Zhang S. … Song X. (Int J Mol Sci 2017) 3 64

Products for MIR30A Gene

Sources for MIR30A Gene

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