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MIR29B1 Gene

RNA gene   GIFtS: 25
GCID: GC07M130562

MicroRNA 29b-1


(Previous symbol: MIRN29B1)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Subcategory (RNA class): lncRNA

Quality score for this RNA gene is 3

Aliases
MicroRNA 29b-11 2
MIRN29B11 2 5
miRNA29B12
mir-29b-19

External Ids:    HGNC: 316191   Entrez Gene: 4070242   Ensembl: ENSG000002263807   OMIM: 6107835   
ORGUL members:         

Export aliases for MIR29B1 gene to outside databases

Previous GC identifer: GC07M130215


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MIR29B1 Gene:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of
gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are
transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can
be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme
to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the
cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The
mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through
imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of
the target mRNA. The RefSeq represents the predicted microRNA stem-loop. (provided by RefSeq, Sep 2009)

GeneCards Summary for MIR29B1 Gene:
MIR29B1 (microRNA 29b-1) is an RNA gene, and is affiliated with the lncRNA class. Diseases associated with MIR29B1 include familial breast cancer, and frontotemporal dementia.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for MIR29B1
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MIR29B1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q32.3   Ensembl cytogenetic band:  7q32.3   HGNC cytogenetic band: 7q32.3

MIR29B1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIR29B1 gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07M130562:  view genomic region (via miRBase)     (about GC identifiers)

Start:
130,561,495 bp from pter      End:
130,598,069 bp from pter
Size:
36,575 bases      Orientation:
minus strand

1 alternative location:
Chr7-,CRA_TCAG 129,901,926-129,902,006     

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
MIR: ncRNAs / Micro RNAs

  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for MIR29B1 About    
See pathways by source

SuperPathContained pathways About
1miRNAs involved in DDR
miRNAs involved in DDR
2MicroRNAs in cancer
MicroRNAs in cancer

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways


1 BioSystems Pathway for MIR29B1
    miRNAs involved in DDR


1 Kegg Pathway  (Kegg details for MIR29B1):
    MicroRNAs in cancer


MIR29B1 for pathways           About GeneDecksing

    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MIR29B1
Interactions:

    Search GeneGlobe Interaction Network for MIR29B1

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for MIR29B1



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000432045(lincRNA)(uc003vqn.4) ENST00000447307(lincRNA) ENST00000418546(lincRNA)(uc022alq.1 uc022alr.1 uc022als.1 uc022alt.1)
ENST00000362111(lincRNA)(uc011kpj.2) ENST00000385015(lincRNA)(uc003vqm.1)

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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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Expression evidence for MIR29B1:none

See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --


MIR29B1 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 2) fully expand
 
 Epithelial Cells
         Duct Cells Pancreatic Ducts
 
 Pancreas (Endocrine System)
         Duct Cells Pancreatic Ducts
MIR29B1 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
    Custom PCR Arrays for MIR29B1
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In Situ
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MIR29B1

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for MIR29B1 gene from Selected species (see all 9)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chicken
(Gallus gallus)
Aves gga-mir-29a6
gga-mir-29a
82(a)
1 ↔ 1
1(3329690-3329778) ENSGALG00000018235
lizard
(Anolis carolinensis)
Reptilia aca-mir-29a-16
aca-mir-29a-1
56(a)
1 → many
5(1036127-1036237) ENSACAG00000018692
zebrafish
(Danio rerio)
Actinopterygii CR749762.26
--
62(a)
1 ↔ 1
23(20637177-20637269) ENSDARG00000083497
        Species with no ortholog for MIR29B1

ENSEMBL Gene Tree for MIR29B1 (if available)
TreeFam Gene Tree for MIR29B1 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MIR29B1 (see all 14)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 7 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs624734921,2
C,F--130563601(+) GTTTTA/GTCATG 1 -- us2k14Minor allele frequency- G:0.19NA WA EA 360
rs1475108171,2
--130563655(+) ATTCAC/TTTAGT 1 -- us2k10--------
rs737227571,2
C,F--130563695(+) AACTTT/CAGTTT 1 -- us2k12Minor allele frequency- C:0.05WA 120
rs1927291681,2
--130563739(+) TTTACA/CATCTC 1 -- us2k10--------
rs1851071161,2
--130563976(+) TTGCTG/TCTAGG 1 -- us2k10--------
rs1154979751,2
C,F--130563984(+) AGGCTG/CGTTTT 1 -- us2k11Minor allele frequency- C:0.01WA 118
rs1452529941,2
C--130563990(+) TTTTT-/AAAAAA 1 -- us2k10--------
rs1163218701,2
--130563991(+) TTTTTA/TAAAAA 1 -- us2k10--------
rs752594591,2
C,F--130564046(+) CGTGGC/TAATCA 1 -- us2k11Minor allele frequency- T:0.01NA 120
rs3707091981,2
----130563668(+) GTTCCC/GTGGCT 1 -- us2k10--------

HapMap Linkage Disequilibrium report for MIR29B1 (130561495 - 130598069 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for MIR29B1: --
Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing MIR29B1
DNA2.0 Custom Variant and Variant Library Synthesis for MIR29B1

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 610783    OMIM disorders: --

16 diseases for MIR29B1:    
About MalaCards
familial breast cancer    frontotemporal dementia    eclampsia    pre-eclampsia
dementia    acute myeloid leukemia    chronic lymphocytic leukemia    cervical cancer
myeloid leukemia    cervicitis    breast cancer    alzheimer's disease
myeloma    leukemia    multiple myeloma    pancreatitis


MIR29B1 for disorders           About GeneDecksing


Congresses - knowledge worth sharing:
Alzheimer's & Parkinson's Diseases Congress (ADPD) 18 - 22 March 2015
Genetic Association Database (GAD): MIR29B1
Human Genome Epidemiology (HuGE) Navigator: MIR29B1 (1 document)

Export disorders for MIR29B1 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MIR29B1 gene, integrated from 10 sources (see all 27):
(articles sorted by number of sources associating them with MIR29B1)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Novel genetic variants in microRNA genes and familial breast cancer. (PubMed id 19048628)1, 4 Shen J....Zhao H. (Int. J. Cancer 2009)
  2. MicroRNA29: a mechanistic contributor and potential biomarker in atrial fibrillation. (PubMed id 23459615)1 Dawson K....Nattel S. (Circulation 2013)
  3. Suppression of Wnt signaling by the miR-29 family is mediated by demethylation of WIF-1 in non-small-cell lung cancer. (PubMed id 23939044)1 Tan M....Cai Y. (Biochem. Biophys. Res. Commun. 2013)
  4. microRNA-29b contributes to pre-eclampsia through its effects on apoptosis, invasion and angiogenesis of trophoblast cells. (PubMed id 22716646)1 Li P....Hou Y. (Clin. Sci. 2013)
  5. MicroRNAs miR-26a, miR-26b, and miR-29b accelerate osteogenic differentiation of unrestricted somatic stem cells from human cord blood. (PubMed id 23418963)1 Trompeter H.I....Wernet P. (BMC Genomics 2013)
  6. Tumour-suppressive microRNA-29s inhibit cancer cell migration and invasion by targeting laminin-integrin signalling in head and neck squamous cell carcinoma. (PubMed id 24091622)1 Kinoshita T....Seki N. (Br. J. Cancer 2013)
  7. miR-29b suppresses CML cell proliferation and induces apoptosis via regulation of BCR/ABL1 protein. (PubMed id 23428668)1 Li Y....Feng W. (Exp. Cell Res. 2013)
  8. Toll-like receptor 3 (TLR3) activation induces microRNA-dependent reexpression of functional RARI^ and tumor regression. (PubMed id 23716670)1 Galli R....Croce C.M. (Proc. Natl. Acad. Sci. U.S.A. 2013)
  9. miR-29b negatively regulates human osteoclastic cell differentiation and function: implications for the treatment of multiple myeloma-related bone disease. (PubMed id 23254643)1 Rossi M....Tassone P. (J. Cell. Physiol. 2013)
  10. Histone deacetylases mediate the silencing of miR-15a, miR-16, and miR-29b in chronic lymphocytic leukemia. (PubMed id 22096249)1 Sampath D....Keating M.J. (Blood 2012)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 407024 HGNC: 31619 Ensembl:ENSG00000226380 miRBase: hsa-mir-29b-1 euGenes: HUgn407024
ECgene: MIR29B1 Kegg: 407024 H-InvDB: MIR29B1

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MIR29B1 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MIR29B1 gene:
Search GeneIP for patents involving MIR29B1

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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