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MIR29A Gene

RNA gene   GIFtS: 24
GCID: GC07M130561

MicroRNA 29a

(Previous name: microRNA 29)
(Previous symbols: MIRN29, MIRN29A)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Subcategory (RNA class): lncRNA

Quality score for this RNA gene is 3

Aliases
MicroRNA 29a1 2     hsa-mir-292
MIRN29A1 2 5     hsa-mir-29a2
MIRN291 2     miRNA29A2
MicroRNA 291     mir-29a9

External Ids:    HGNC: 316161   Entrez Gene: 4070212   Ensembl: ENSG000002263807   OMIM: 6107825   
ORGUL members:         

Export aliases for MIR29A gene to outside databases

Previous GC identifer: GC07M130214


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MIR29A Gene:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of
gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are
transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can
be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme
to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the
cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The
mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through
imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of
the target mRNA. The RefSeq represents the predicted microRNA stem-loop. (provided by RefSeq, Sep 2009)

GeneCards Summary for MIR29A Gene:
MIR29A (microRNA 29a) is an RNA gene, and is affiliated with the lncRNA class. Diseases associated with MIR29A include alk-negative anaplastic large cell lymphoma, and anaplastic large cell lymphoma.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for MIR29A
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for MIR29A

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MIR29A


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q32.3   Ensembl cytogenetic band:  7q32.3   HGNC cytogenetic band: 7q32.3

MIR29A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIR29A gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07M130561:  view genomic region (via miRBase)     (about GC identifiers)

Start:
130,561,495 bp from pter      End:
130,598,069 bp from pter
Size:
36,575 bases      Orientation:
minus strand

1 alternative location:
Chr7-,CRA_TCAG 129,901,214-129,901,277     

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
MIR: ncRNAs / Micro RNAs

  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for MIR29A About    
See pathways by source

SuperPathContained pathways About
1TFs Regulate miRNAs related to cardiac hypertrophy
TFs Regulate miRNAs related to cardiac hypertrophy
2miRNAs involved in DDR
miRNAs involved in DDR
3MicroRNAs in cancer
MicroRNAs in cancer

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways


2 BioSystems Pathways for MIR29A
    miRNAs involved in DDR
TFs Regulate miRNAs related to cardiac hypertrophy


1 Kegg Pathway  (Kegg details for MIR29A):
    MicroRNAs in cancer


MIR29A for pathways           About GeneDecksing

    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MIR29A
Interactions:

    Search GeneGlobe Interaction Network for MIR29A

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for MIR29A



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000432045(lincRNA)(uc003vqn.4) ENST00000447307(lincRNA) ENST00000418546(lincRNA)(uc022alq.1 uc022alr.1 uc022als.1 uc022alt.1)
ENST00000362111(lincRNA)(uc011kpj.2) ENST00000385015(lincRNA)(uc003vqm.1)
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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Expression evidence for MIR29A:none

See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --

MIR29A Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
    Custom PCR Arrays for MIR29A
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In Situ
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for MIR29A gene from Selected species (see all 9)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chicken
(Gallus gallus)
Aves gga-mir-29a6
gga-mir-29a
82(a)
1 ↔ 1
1(3329690-3329778) ENSGALG00000018235
lizard
(Anolis carolinensis)
Reptilia aca-mir-29a-16
aca-mir-29a-1
56(a)
1 → many
5(1036127-1036237) ENSACAG00000018692
zebrafish
(Danio rerio)
Actinopterygii CR749762.26
--
62(a)
1 ↔ 1
23(20637177-20637269) ENSDARG00000083497
        Species with no ortholog for MIR29A

ENSEMBL Gene Tree for MIR29A (if available)
TreeFam Gene Tree for MIR29A (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MIR29A (see all 17)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 7 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs126710821,2
H--130561201(+) ATCATC/ATAAGC 1 -- ds50014Minor allele frequency- A:0.00NS EA 418
rs784805551,2
C--130561212(+) CAGTCA/GTCGAT 1 -- ds50010--------
rs347725681,2
C,F--130561265(+) CCCCCA/GCCAAG 1 -- ds50018Minor allele frequency- G:0.11NA WA CSA 250
rs241681,2
C,F,O,H--130561285(-) CTTTAC/TAGAAA 1 -- ds500126Minor allele frequency- T:0.46NA PA EA NS CSA WA 3228
rs578268321,2
C,F--130561346(+) ACATGC/AAATTC 1 -- ds50012Minor allele frequency- A:0.05CSA WA 122
rs1467198551,2
--130561351(+) CAATTA/CAGGTC 1 -- ds50010--------
rs615459691,2
C,F--130561391(+) GAAAAA/GTCACC 1 -- ds50012Minor allele frequency- G:0.05CSA WA 123
rs1403597141,2
--130561407(+) ATTATC/TGCTTT 1 -- ds50010--------
rs1826245211,2
C--130561615(+) CCAAAC/TCTTAC 1 -- us2k10--------
rs1169519821,2
F--130561716(+) AGTATA/GAAATT 1 -- us2k11Minor allele frequency- G:0.01EA 120

HapMap Linkage Disequilibrium report for MIR29A (130561495 - 130598069 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for MIR29A: --
Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing MIR29A
DNA2.0 Custom Variant and Variant Library Synthesis for MIR29A

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 610782    OMIM disorders: --

Selected diseases for MIR29A (see all 30):    
About MalaCards
alk-negative anaplastic large cell lymphoma    anaplastic large cell lymphoma    mantle cell lymphoma    alk-positive anaplastic large cell lymphoma
epididymitis    acute myeloid leukemia    rhabdomyosarcoma    chronic lymphocytic leukemia
cervical cancer    osteosarcoma    multiple sclerosis    myeloid leukemia
cervicitis    myocardial infarction    b-cell lymphomas    lung cancer
colorectal cancer    alzheimer's disease    multiple myeloma    hiv-1


MIR29A for disorders           About GeneDecksing

Genetic Association Database (GAD): MIR29A
Human Genome Epidemiology (HuGE) Navigator: MIR29A (3 documents)

Export disorders for MIR29A gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MIR29A gene, integrated from 10 sources (see all 66):
(articles sorted by number of sources associating them with MIR29A)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Novel genetic variants in miR-191 gene and familial ovarian cancer. (PubMed id 20167074)1, 4 Shen J....Zhao H. (BMC Cancer 2010)
  2. Downregulation of miR-29 contributes to cisplatin resistance of ovarian cancer cells. (PubMed id 23904094)1 Yu P.N....Lin Y.W. (Int. J. Cancer 2014)
  3. MiR-222 and miR-29a contribute to the drug-resistance of breast cancer cells. (PubMed id 23994196)1 Zhong S....Zhao J. (Gene 2013)
  4. The intracellular sensor NOD2 induces microRNA-29 expression in human dendritic cells to limit IL-23 release. (PubMed id 24054330)1 Brain O....Simmons A. (Immunity 2013)
  5. Suppression of Wnt signaling by the miR-29 family is mediated by demethylation of WIF-1 in non-small-cell lung cancer. (PubMed id 23939044)1 Tan M....Cai Y. (Biochem. Biophys. Res. Commun. 2013)
  6. Decreased expression of miR-21, miR-26a, miR-29a, and miR-142-3p in CD4a8_ T cells and peripheral blood from tuberculosis patients. (PubMed id 23613882)1 Kleinsteuber K....Jacobsen M. (PLoS ONE 2013)
  7. UTRly malignant: mRNA stability and the invasive phenotype inA breast cancer. (PubMed id 23389914)1 Le Quesne J. (J. Pathol. 2013)
  8. microRNA expression profile in stage III colorectal cancer: circulating miR-18a and miR-29a as promising biomarkers. (PubMed id 23673725)1 Brunet Vega A....SaigA- E. (Oncol. Rep. 2013)
  9. miR-29 acts as a decoy in sarcomas to protect the tumor suppressor A20 mRNA from degradation by HuR. (PubMed id 23901138)1 Balkhi M.Y....Guttridge D.C. (Sci Signal 2013)
  10. Serum miR-29a as a marker of multiple myeloma. (PubMed id 22712836)1 Sevcikova S....Hajek R. (amp 2013)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 407021 HGNC: 31616 Ensembl:ENSG00000226380 miRBase: hsa-mir-29a euGenes: HUgn407021
ECgene: MIR29A Kegg: 407021 H-InvDB: MIR29A

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MIR29A Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MIR29A gene:
Search GeneIP for patents involving MIR29A

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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