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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

MIR29A Gene

RNA gene   GIFtS: 27
GCID: GC07M130561

MicroRNA 29a

(Previous name: microRNA 29)
(Previous symbols: MIRN29, MIRN29A)
Microbiology & Infectious Diseases Congress
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Subcategory (RNA class): miRNA

Quality score for this RNA gene is 18.2

Aliases
MicroRNA 29a1 2     hsa-mir-292
MIRN29A1 2 5     hsa-mir-29a2
MIRN291 2     miRNA29A2
MicroRNA 291     mir-29a9

External Ids:    HGNC: 316161   Entrez Gene: 4070212   Ensembl: ENSG000001989817   OMIM: 6107825   
ORGUL members:    fRNAdb10:FR062169 FR401283      
miRBase:MIMAT0000086 MIMAT0000535 MIMAT0000802 MI0000087 MIMAT0004503    
RNAdb15:EVF22234    

Export aliases for MIR29A gene to outside databases

Previous GC identifer: GC07M130214


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for MIR29A Gene:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of
gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are
transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can
be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme
to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the
cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The
mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through
imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of
the target mRNA. The RefSeq represents the predicted microRNA stem-loop. (provided by RefSeq, Sep 2009)

GeneCards Summary for MIR29A Gene: 
MIR29A (microRNA 29a) is an RNA gene, and is affiliated with the miRNA class. Diseases associated with MIR29A include alk-negative anaplastic large cell lymphoma, and mantle cell lymphoma.



fRNAdb sequence ontologies for MIR29A - the ORGUL cluster for this gene includes several descriptions:
nc_conserved_region - Non-coding region of sequence similarity by descent from a common ancestor.
miRNA - Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors.

View fRNAdb secondary structures for MIR29A

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for MIR29A
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for MIR29A

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MIR29A


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q32.3   Ensembl cytogenetic band:  7q32.3   HGNC cytogenetic band: 7q32.3

MIR29A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIR29A gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07M130561:  view genomic region (via miRBase)     (about GC identifiers)

Start:
130,561,495 bp from pter      End:
130,561,580 bp from pter
Size:
86 bases      Orientation:
minus strand

1 alternative location:
Chr7-,CRA_TCAG 129,901,214-129,901,277     

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
HGNC Gene Families: 
MIR: ncRNAs / Micro RNAs

  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Animal Models:
   inGenious Targeting Laboratory - Custom generated mouse model solutions for MIR29A 
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miRNA
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miRTarBase genes targeted by MIR29A:
CPEB3(MIRT005591), FGA(MIRT005531), CD276(MIRT003343), RAN(MIRT001196), TGFB3(MIRT005910), TET1(MIRT004420), COL4A2(MIRT003220), ADAMTS9(MIRT005668), IMPDH1(MIRT003737), PPM1D(MIRT004044), CDK6(MIRT000682), RET(MIRT005908), PIK3R1(MIRT004103), CPEB4(MIRT005592), LPL(MIRT005584), DKK1(MIRT003609), FGB(MIRT005532), ITGA11(MIRT005675), GLUL(MIRT004021), BACE1(MIRT001766), COL4A1(MIRT003221), TRIM63(MIRT005909), BCL2(MIRT003291), S100B(MIRT003735), SFRP2(MIRT003607), DNMT3A(MIRT003021), DIABLO(MIRT005907), MCL1(MIRT003286), DAG1(MIRT005906), KREMEN2(MIRT004564), DNMT3B(MIRT003027), FGG(MIRT005521)

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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section

SuperPaths for MIR29A About                                                                                                See pathways by source

SuperPathContained pathways About
1miRNAs involved in DDR
miRNAs involved in DDR
2MicroRNAs in cancer
MicroRNAs in cancer
3TFs Regulate miRNAs related to cardiac hypertrophy
TFs Regulate miRNAs related to cardiac hypertrophy

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways


2 BioSystems Pathways for MIR29A
    miRNAs involved in DDR
TFs Regulate miRNAs related to cardiac hypertrophy


1         Kegg Pathway  (Kegg details for MIR29A):
    MicroRNAs in cancer


MIR29A for pathways           About GeneDecksing

Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MIR29A

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for MIR29A

Search CenterWatch for drugs/clinical trials and news about MIR29A

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section
1 fRNAdb Secondary structure:


1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000362111(miRNA)
Congresses - knowledge worth sharing:  
European Congress of Clinical Microbiology and Infectious Diseases (ECCMID) 10 - 13 May 2014

miRNA
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

Expression evidence for MIR29A:miRBase

MIR29A expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
MIR29A Expression
About this image

    SABiosciences Custom PCR Arrays for MIR29A
Primer
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MIR29A

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for MIR29A gene from 1/6 species (see all 6)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
lizard
(Anolis carolinensis)
Reptilia aca-mir-29a-16
aca-mir-29a-1
57(a)
1 ↔ 1
5(1036127-1036237) ENSACAG00000018692
        Species with no ortholog for MIR29A

ENSEMBL Gene Tree for MIR29A (if available)
TreeFam Gene Tree for MIR29A (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/17 SNPs in MIR29A are shown (see all 17)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 7 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs126710821,2
H--130561201(+) ATCATC/ATAAGC 1 -- ds50014Minor allele frequency- A:0.00NS EA 418
rs784805551,2
C--130561212(+) CAGTCA/GTCGAT 1 -- ds50010--------
rs347725681,2
C,F--130561265(+) CCCCCA/GCCAAG 1 -- ds50018Minor allele frequency- G:0.11NA WA CSA 250
rs241681,2
C,F,O,H--130561285(-) CTTTAC/TAGAAA 1 -- ds500126Minor allele frequency- T:0.46NA PA EA NS CSA WA 3228
rs578268321,2
C,F--130561346(+) ACATGC/AAATTC 1 -- ds50012Minor allele frequency- A:0.05CSA WA 122
rs1467198551,2
--130561351(+) CAATTA/CAGGTC 1 -- ds50010--------
rs615459691,2
C,F--130561391(+) GAAAAA/GTCACC 1 -- ds50012Minor allele frequency- G:0.05CSA WA 123
rs1403597141,2
--130561407(+) ATTATC/TGCTTT 1 -- ds50010--------
rs1826245211,2
C--130561615(+) CCAAAC/TCTTAC 1 -- us2k10--------
rs1169519821,2
F--130561716(+) AGTATA/GAAATT 1 -- us2k11Minor allele frequency- G:0.01EA 120

HapMap Linkage Disequilibrium report for MIR29A (130561495 - 130561580 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for MIR29A: --
SABiosciences Cancer Mutation PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing MIR29A
DNA2.0 Custom Variant and Variant Library Synthesis for MIR29A

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
OMIM gene information: 610782    OMIM disorders: --

20/22 diseases for MIR29A (see all 22):    About MalaCards
alk-negative anaplastic large cell lymphoma    mantle cell lymphoma    anaplastic large cell lymphoma    chronic lymphocytic leukemia
rhabdomyosarcoma    epididymitis    cervical cancer    myocardial infarction
lung cancer    cervicitis    gastric cancer    alzheimer's disease
osteosarcoma    acute myeloid leukemia    multiple sclerosis    myeloid leukemia
leukemia    colon cancer    pancreatitis    colorectal cancer


MIR29A for disorders           About GeneDecksing


Congresses - knowledge worth sharing:  
Alzheimer's & Parkinson's Diseases Congress (ADPD) 18 - 22 March 2015
Genetic Association Database (GAD): MIR29A
Human Genome Epidemiology (HuGE) Navigator: MIR29A (3 documents)

Export disorders for MIR29A gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for MIR29A gene, integrated from 9 sources (see all 57):
(articles sorted by number of sources associating them with MIR29A)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Novel genetic variants in miR-191 gene and familial o varian cancer. (PubMed id 20167074)1, 4 Shen J....Zhao H. (2010)
  2. Serum miR-29a as a marker of multiple myeloma. (PubMed id 22712836)1 Sevcikova S....Hajek R. (2013)
  3. Prognostic value of miR-29a expression in pediatric ac ute myeloid leukemia. (PubMed id 22981932)1 Zhu C....Hong Z. (2013)
  4. Transforming growth factor b-regulated microRNA-29a pr omotes angiogenesis through targeting the phosphatase and tensin homolog in endo thelium. (PubMed id 23426367)1 Wang J....Yang X. (2013)
  5. miR-29a inhibition normalizes HuR over-expression and aberrant AU-rich mRNA stability in invasive cancer. (PubMed id 23401122)1 Al-Ahmadi W....Khabar K.S. (2013)
  6. Regulation of human RNase-L by the miR-29 family revea ls a novel oncogenic role in chronic myelogenous leukemia. (PubMed id 23113544)1 Lee T.Y....Hassel B.A. (2013)
  7. UTRly malignant: mRNA stability and the invasive pheno type in breast cancer. (PubMed id 23389914)1 Le Quesne J. (2013)
  8. MiR-29a modulates the angiogenic properties of human e ndothelial cells. (PubMed id 23541945)1 Yang Z....Wu F. (2013)
  9. Circulating miR-17-3p, miR-29a, miR-92a and miR-135b i n serum: Evidence against their usage as biomarkers in colorectal cancer. (PubMed id 23568010)1 Faltejskova P....Slaby O. (2012)
  10. MicroRNA-29a and microRNA-142-3p are regulators of mye loid differentiation and acute myeloid leukemia. (PubMed id 22493297)1 Wang X.S....Zhang J.W. (2012)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 407021 HGNC: 31616 Ensembl:ENSG00000198981 miRBase: hsa-mir-29a euGenes: HUgn407021
ECgene: MIR29A Kegg: 407021 H-InvDB: MIR29A

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for MIR29A Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for MIR29A gene:
Search GeneIP for patents involving MIR29A

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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About This Section

 
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 inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for MIR29A
Customized:
 lentivirus for stable overexpression
 lentivirus expression plasmids for stable overexpression
 adenovirus for overexpression
 Search LSBio for Antibodies for MIR29A
Customized transgenic rodents for:
 Humanization
 Biomarker expression
 Off-target effect monitoring
 Translational medicine
 Tissue-specific gene expresssion
 Time-controlled gene expresssion
       
GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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(GIFtS: 73)
transforming growth factor, beta 1
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Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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