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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

MIR221 Gene

RNA gene GIFtS: 23
GCID: GC0XM045605

microRNA 221

(Previous symbol: MIRN221)

Explore 27 diseases affiliated with
MIR221 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Subcategory (RNA class): miRNA

Quality score for this RNA gene is 13

Aliases
MicroRNA 221¹ ²
MIRN221¹ ² ⁵
Mir-221¹
Hsa-Mir-221¹
MiRNA221¹

External Ids:	HGNC: 31601¹	Entrez Gene: 407006²	Ensembl: ENSG00000207870⁷	OMIM: 300568⁵

ORGUL members:
	miRBase: MI0000298

Export aliases for MIR221 gene to outside databases

Previous GC identifer: GC0XM045492

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for MIR221:

microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene

expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed

by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either

protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an

approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer

ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated

into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the

miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq

represents the predicted microRNA stem-loop. (provided by RefSeq, Sep 2009)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

Regulatory elements:

Search SABiosciences Regulatory transcription factor binding sites for MIR221
Other transcription factors

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Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MIR221

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xp11.3 Ensembl cytogenetic band: Xp11.3 HGNC cytogenetic band: Xp11.3

MIR221 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIR221 gene location

GeneLoc information about chromosome X GeneLoc Exon Structure

GeneLoc location for GC0XM045605: view genomic region (via miRBase) (about GC identifiers)

Start:	45,605,585 bp from pter	End:	45,605,694 bp from pter
Size:	110 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB: --

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

miRNA Products:		miRTarBase genes targeted by MIR221: FOS(MIRT004484), KIT(MIRT001780), NAIP(MIRT005295), TP53(MIRT005785), TICAM1(MIRT005475), ESR1(MIRT005320), BNIP3(MIRT004753), DDIT4(MIRT003358), FOXO3(MIRT000434), SELE(MIRT005714), CDKN1C(MIRT002272), CORO1A(MIRT005787), ICAM1(MIRT004430), CDKN1B(MIRT000137), SSSCA1(MIRT005788), BMF(MIRT000141), TCEAL1(MIRT005789), PTEN(MIRT005585), BBC3(MIRT003367)

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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for MIR221

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for MIR221
Search CenterWatch for drugs/clinical trials and news about MIR221

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

1 Ensembl transcript including schematic representation, and UCSC links where relevant:

ENST00000385135(miRNA)

miRNA Products:		Browse 3'-UTR reporter clones for miRNA target validation Browse OriGene MicroRNA Expression Plasmids
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GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

Expression evidence for MIR221:none

MIR221 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --

About this image

MIR221 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

Stem Cell Differentiation: 2 LifeMap Cells

Name

Category

PureStem™ progenitor SK17 (Embryonic Progenitor Cell)

PureStem™ progenitor W8 (Embryonic Progenitor Cell)

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

SABiosciences Custom PCR Arrays for MIR221

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		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat MIR221

In Situ
Assay Products:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

--

ENSEMBL Gene Tree for MIR221 (if available)
TreeFam Gene Tree for MIR221 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for MIR221 gene

MIR222²

MIR221 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr X pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs7050391^1,2	C,	--	45605273(+)	`GGGTGC/TTATGC`	1	--	ds500¹		0	--	--	--	--
rs181300453^1,2		--	45605440(+)	`TCGTAC/TTGAAA`	1	--	ds500¹		0	--	--	--	--
rs185905117^1,2		--	45605523(+)	`GTTTAC/TACCTC`	1	--	ds500¹		0	--	--	--	--
rs191213444^1,2		--	45605777(+)	`TTCTAA/CCACAA`	1	--	us2k¹		0	--	--	--	--
rs182584022^1,2		--	45605837(+)	`AAAATG/TTCCTT`	1	--	us2k¹		0	--	--	--	--
rs188889748^1,2		--	45605965(+)	`GGTACA/GTGGGC`	2	--	ds500¹ us2k¹		0	--	--	--	--
rs201795537^1,2		--	45605993(+)	`GATGG-/ATGGGTG GATGGATAAATGGG`	2	--	us2k¹ ds500¹		0	--	--	--	--
rs199770432^1,2		--	45606096(+)	`GGGAA-/AGAGAAA`	2	--	ds500¹ us2k¹		0	--	--	--	--
rs191090226^1,2		--	45606116(+)	`TAAAAC/GAAAAA`	2	--	ds500¹ us2k¹		0	--	--	--	--
rs2858061^1,2	C,A,H,	--	45606132(-)	`TTTTAG/CCTCTT`	2	--	us2k¹ ds500¹ tfbs³		7		WA NA CSA	11

HapMap Linkage Disequilibrium report for MIR221 (45605585 - 45605694 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for MIR221: --

SABiosciences Cancer Mutation PCR Assays

Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing MIR221

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

MIR221 for disorders           About GeneDecksing

OMIM gene information: 300568    OMIM disorders: --

20/27 diseases for MIR221 (see all 27):    About MalaCards

benign metastasizing leiomyoma gastrointestinal stromal tumor papillary thyroid carcinoma rhabdoid tumors

acute lymphocytic leukemia lymphocytic leukemia leiomyoma thyroid carcinoma

myelodysplastic syndrome papillary carcinoma noma thyroiditis

hepatocellular carcinoma cervical cancer carcinoma cervicitis

prostate carcinoma colorectal cancer leukemia lung cancer

Human Genome Epidemiology (HuGE) Navigator: MIR221 (2 documents)

Export disorders for MIR221 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for MIR221 gene, integrated from 9 sources (see all 90):
(articles sorted by number of sources associating them with MIR221)

Utopia: connect your pdf to the dynamic
world of online information

MicroRNA-221 regulates high glucose-induced endothelial dysfunction. (PubMed id 19351599)^{1, 9} Li Y....Geng Y.J. (2009)
Urinary sediment ICAM-1 level in lupus nephritis. (PubMed id 22685016)¹ Guan J....Szeto C.C. (2012)
Downregulation of miR-221/222 sensitizes glioma cells to temozolomide by regulating apoptosis independently of p53 status. (PubMed id 22075712)¹ Chen L....Kang C. (2012)
Adipocyte differentiation of human bone marrow-derived stromal cells is modulated by microRNA-155, microRNA-221, and microRNA-222. (PubMed id 21756067)¹ Skarn M....Myklebost O. (2012)
miR-221/222 overexpession in human glioblastoma increa ses invasiveness by targeting the protein phosphate PTP/. (PubMed id 21743492)¹ Quintavalle C....Condorelli G. (2012)
MicroRNA expression profile helps to distinguish benig n nodules from papillary thyroid carcinomas starting from cells of fine-needle a spiration. (PubMed id 22728346)¹ Agretti P....Tonacchera M. (2012)
Increased Expression of MicroRNA-221 in gastric cancer and its clinical significance. (PubMed id 22613407)¹ Liu K....Li J. (2012)
Identification of microRNA-221/222 and microRNA-323-3p association with rheumatoid arthritis via predictions using the human tumour ne crosis factor transgenic mouse model. (PubMed id 22562984)¹ Pandis I....Kollias G. (2012)
MicroRNA expression aids the preoperative diagnosis of pancreatic ductal adenocarcinoma. (PubMed id 22466166)¹ Panarelli N.C....Yantiss R.K. (2012)
MicroRNA-221/222 upregulation indicates the activation of stellate cells and the progression of liver fibrosis. (PubMed id 22267590)¹ Ogawa T....Kawada N. (2012)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 407006	HGNC: 31601	Ensembl:ENSG00000207870	miRBase: hsa-mir-221	euGenes: HUgn407006
ECgene: MIR221	H-InvDB: MIR221

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for MIR221	Pharmacogenomics, SNPs, Pathways

Intellectual Property for MIR221 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for MIR221 gene:
Search GeneIP for patents involving MIR221

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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for MIR221 gene

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for MIR221 gene

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for MIR221 gene