Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR219A1 Gene

Subcategory (RNA class) for MIR219A1 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR219A1 Gene

  • MicroRNA 219a-1 2 3 5
  • MicroRNA 219-1 2 3
  • Hsa-Mir-219a-1 3
  • Hsa-Mir-219-1 3
  • Mir-219a-1 3
  • MIRN219-1 3
  • MRI219-1 3
  • MIR219-1 3
  • Mir-219 3

External Ids for MIR219A1 Gene

Previous HGNC Symbols for MIR219A1 Gene

  • MIRN219-1
  • MIR219-1

Previous GeneCards Identifiers for MIR219A1 Gene

  • GC06P033206

Summaries for MIR219A1 Gene

Entrez Gene Summary for MIR219A1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR219A1 Gene

MIR219A1 (MicroRNA 219a-1) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR219A1 Gene

Genomics for MIR219A1 Gene

Regulatory Elements for MIR219A1 Gene

Enhancers for MIR219A1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F032633 1.6 FANTOM5 Ensembl ENCODE 16.2 -570.8 -570831 7.2 HDGF WRNIP1 FEZF1 GLI4 ZNF2 ZNF121 GLIS2 ZNF416 ZNF143 TBX21 HLA-DQA1 HLA-DQB1 HLA-DQA2 HLA-DRB1 HLA-DQB2 HLA-DRB5 HLA-DRB6 CYP21A1P LOC102725019 MIR219A1
GH06F033414 1.5 FANTOM5 ENCODE 16.2 +209.9 209875 6.4 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A FEZF1 RPL35AP4 HTATSF1P1 MIR219A1 KRT18P9 CYCSP55 LOC102725019 RING1 ENSG00000233183 MIR5004 CUTA
GH06F033247 1.4 FANTOM5 ENCODE 16.4 +41.7 41743 3.3 HDGF PKNOX1 ARNT CREB3L1 MLX SIN3A ARID4B DMAP1 ZNF2 YY1 DAXX HTATSF1P1 MIR219A1 RPL35AP4 LOC102725019 KRT18P9 CYCSP55 ENSG00000233183 TAPBP HCG25
GH06F033000 1.4 Ensembl ENCODE 16.2 -207.5 -207535 0.6 HDGF PKNOX1 ARNT ARID4B SIN3A ZNF2 YY1 ZNF143 ZNF207 ZNF263 MIR219A1 HTATSF1P1 LOC102725019 RPL35AP4 HLA-DMA ENSG00000233183 HLA-DPB1 RPL32P1 HLA-DPA1 TAP1
GH06F033618 1.4 FANTOM5 ENCODE 16.2 +414.3 414250 6.5 HDGF PKNOX1 MLX CREB3L1 WRNIP1 ZFP64 SIN3A ARID4B DMAP1 ZNF2 RPL35AP4 HTATSF1P1 MIR219A1 CYCSP55 KRT18P9 LOC102725019 ITPR3 ENSG00000233183 RING1 IP6K3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR219A1 on UCSC Golden Path with GeneCards custom track

Promoters for MIR219A1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001494638 665 1801 HDGF CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 SP3 SP5

Genomic Location for MIR219A1 Gene

Chromosome:
6
Start:
33,207,835 bp from pter
End:
33,207,944 bp from pter
Size:
110 bases
Orientation:
Plus strand

Genomic View for MIR219A1 Gene

Genes around MIR219A1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR219A1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR219A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for MIR219A1 Gene

Post-translational modifications for MIR219A1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR219A1 Gene

Domains & Families for MIR219A1 Gene

Gene Families for MIR219A1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR219A1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR219A1 Gene

Function for MIR219A1 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR219A1 Gene

Localization for MIR219A1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR219A1 Gene

Pathways & Interactions for MIR219A1 Gene

SuperPathways for MIR219A1 Gene

No Data Available

Interacting Proteins for MIR219A1 Gene

Gene Ontology (GO) - Biological Process for MIR219A1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR219A1 Gene

Transcripts for MIR219A1 Gene

mRNA/cDNA for MIR219A1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR219A1 Gene

No ASD Table

Relevant External Links for MIR219A1 Gene

GeneLoc Exon Structure for
MIR219A1
ECgene alternative splicing isoforms for
MIR219A1

Expression for MIR219A1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR219A1 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR219A1 Gene:

MIR219A1
genes like me logo Genes that share expression patterns with MIR219A1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR219A1 Gene

Orthologs for MIR219A1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MIR219A1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-219-1 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia cfa-mir-219-1 35
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mir219-1 35
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia bta-mir-219-2 35
  • 95 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia mdo-mir-219-2 35
  • 84 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia aca-mir-219-2 35
  • 75 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii dre-mir-219-2 35
  • 61 (a)
ManyToMany
CR848045.1 35
  • 40 (a)
ManyToMany
dre-mir-219-3 35
  • 34 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea csa-mir-219 35
  • 48 (a)
OneToMany
Species where no ortholog for MIR219A1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MIR219A1 Gene

ENSEMBL:
Gene Tree for MIR219A1 (if available)
TreeFam:
Gene Tree for MIR219A1 (if available)

Paralogs for MIR219A1 Gene

No data available for Paralogs for MIR219A1 Gene

Variants for MIR219A1 Gene

Sequence variations from dbSNP and Humsavar for MIR219A1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs107822 -- 33,207,798(-) GGAAT(A/G)GAGAC upstream-variant-2KB
rs111665837 -- 33,208,296(+) CCGCG(C/T)GACGG downstream-variant-500B, upstream-variant-2KB
rs113024181 -- 33,208,163(+) AGAGT(C/G)GGGGA downstream-variant-500B, upstream-variant-2KB
rs114938492 -- 33,207,053(+) GCACC(A/G)GTCCC downstream-variant-500B, upstream-variant-2KB
rs115715785 -- 33,206,641(+) AGGAG(A/G)TCTTT upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for MIR219A1 Gene

Variant ID Type Subtype PubMed ID
nsv830634 CNV loss 17160897
nsv522719 CNV loss 19592680
nsv1119076 CNV deletion 24896259
nsv1112900 CNV deletion 24896259
nsv1073969 CNV deletion 25765185
dgv10609n54 CNV loss 21841781

Relevant External Links for MIR219A1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR219A1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR219A1 Gene

Disorders for MIR219A1 Gene

Relevant External Links for MIR219A1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR219A1

No disorders were found for MIR219A1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR219A1 Gene

Publications for MIR219A1 Gene

  1. MiR-219 Protects Against Seizure in the Kainic Acid Model of Epilepsy. (PMID: 25394384) Zheng H. … Zheng W. (Mol. Neurobiol. 2016) 3 64
  2. The TLX-miR-219 cascade regulates neural stem cell proliferation in neurodevelopment and schizophrenia iPSC model. (PMID: 26965827) Murai K. … Shi Y. (Nat Commun 2016) 3 64
  3. miR-219-1-3p is a negative regulator of the mucin MUC4 expression and is a tumor suppressor in pancreatic cancer. (PMID: 24608432) Lahdaoui F. … Van Seuningen I. (Oncogene 2015) 3 64
  4. miR-219-5p modulates cell growth of papillary thyroid carcinoma by targeting estrogen receptor I+. (PMID: 25423566) Huang C. … Xu H. (J. Clin. Endocrinol. Metab. 2015) 3 64
  5. Polymorphisms in microRNA genes as predictors of clinical outcomes in colorectal cancer patients. (PMID: 25368035) Pardini B. … Vodicka P. (Carcinogenesis 2015) 3 64

Products for MIR219A1 Gene

Sources for MIR219A1 Gene

Content
Loading form....