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Aliases for MIR218-1 Gene

Subcategory (RNA class) for MIR218-1 Gene

undefined

Quality Score for this RNA gene is

3

Aliases for MIR218-1 Gene

  • MicroRNA 218-1 2 3 5
  • Hsa-Mir-218-1 3
  • Mir-218-1 3
  • MIRN218-1 3

External Ids for MIR218-1 Gene

ORGUL Members for MIR218-1 Gene

Previous HGNC Symbols for MIR218-1 Gene

  • MIRN218-1

Previous GeneCards Identifiers for MIR218-1 Gene

  • GC04P020138

Summaries for MIR218-1 Gene

Entrez Gene Summary for MIR218-1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

CIViC summary for MIR218-1 Gene

GeneCards Summary for MIR218-1 Gene

MIR218-1 (MicroRNA 218-1) is an RNA Gene, and is affiliated with the undefined RNA class. Among its related pathways are Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins..

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR218-1 Gene

Genomics for MIR218-1 Gene

Regulatory Elements for MIR218-1 Gene

Enhancers for MIR218-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G020512 0.6 ENCODE 0.4 -15.8 -15831 0.7 PRDM6 FOXA2 GATA2 TAL1 NR2F6 NR2F2 FOXA1 MIR218-1 GC04P020481
GH04G020506 0.7 ENCODE 0.3 -21.4 -21351 0.9 PKNOX1 JUN CEBPB PAX8 CEBPG EP300 JUND GATA3 GATA2 FOS MIR218-1 GC04P020481
GH04G020493 0.6 ENCODE 0.3 -34.3 -34263 0.2 CTBP1 GATA3 FOXA2 NFIB RAD21 EZH2 FOXA1 GC04P020481 MIR218-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR218-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR218-1 Gene

Chromosome:
4
Start:
20,528,275 bp from pter
End:
20,528,384 bp from pter
Size:
110 bases
Orientation:
Plus strand

Genomic View for MIR218-1 Gene

Genes around MIR218-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR218-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR218-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR218-1 Gene

Proteins for MIR218-1 Gene

Post-translational modifications for MIR218-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR218-1 Gene

Domains & Families for MIR218-1 Gene

Gene Families for MIR218-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR218-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR218-1 Gene

Function for MIR218-1 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR218-1 Gene

Localization for MIR218-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR218-1 Gene

Pathways & Interactions for MIR218-1 Gene

genes like me logo Genes that share pathways with MIR218-1: view

Pathways by source for MIR218-1 Gene

1 BioSystems pathway for MIR218-1 Gene

Interacting Proteins for MIR218-1 Gene

Gene Ontology (GO) - Biological Process for MIR218-1 Gene

None

No data available for SIGNOR curated interactions for MIR218-1 Gene

Transcripts for MIR218-1 Gene

mRNA/cDNA for MIR218-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR218-1 Gene

No ASD Table

Relevant External Links for MIR218-1 Gene

GeneLoc Exon Structure for
MIR218-1
ECgene alternative splicing isoforms for
MIR218-1

Expression for MIR218-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR218-1 Gene

genes like me logo Genes that share expression patterns with MIR218-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR218-1 Gene

Orthologs for MIR218-1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MIR218-1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-218-1 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia cfa-mir-218-1 35
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia bta-mir-218-1 35
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mir218-1 35
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia mdo-mir-218-1 35
  • 96 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia oan-mir-218-1 35
  • 86 (a)
OneToOne
chicken
(Gallus gallus)
Aves gga-mir-218-1 35
  • 98 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 86 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii dre-mir-218a-2 35
  • 80 (a)
OneToMany
Species where no ortholog for MIR218-1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MIR218-1 Gene

ENSEMBL:
Gene Tree for MIR218-1 (if available)
TreeFam:
Gene Tree for MIR218-1 (if available)

Paralogs for MIR218-1 Gene

No data available for Paralogs for MIR218-1 Gene

Variants for MIR218-1 Gene

Sequence variations from dbSNP and Humsavar for MIR218-1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000271872 -- 20,527,229(+) TACTA(C/G)CATTT intron-variant, upstream-variant-2KB
rs1000895901 -- 20,527,293(+) TCATC(-/T)TTTTT intron-variant, upstream-variant-2KB
rs1001116115 -- 20,527,295(+) CATCT(C/T)TTTTT intron-variant, upstream-variant-2KB
rs1002791249 -- 20,526,952(+) TCTTA(C/T)TTCAT intron-variant, upstream-variant-2KB
rs1002793019 -- 20,528,370(+) ACGTC(A/T)CGCAG intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for MIR218-1 Gene

Variant ID Type Subtype PubMed ID
nsv829875 CNV gain+loss 17160897

Relevant External Links for MIR218-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR218-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR218-1 Gene

Disorders for MIR218-1 Gene

Relevant External Links for MIR218-1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR218-1

No disorders were found for MIR218-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR218-1 Gene

Publications for MIR218-1 Gene

  1. Regulation of metastasis-promoting LOXL2 gene expression by antitumor microRNAs in prostate cancer. (PMID: 27278788) Kato M. … Seki N. (J. Hum. Genet. 2017) 3 64
  2. Predictive Value of MiR-219-1, MiR-938, MiR-34b/c, and MiR-218 Polymorphisms for Gastric Cancer Susceptibility and Prognosis. (PMID: 28298809) Wu Y. … Jiang J. (Dis. Markers 2017) 3 64
  3. miR-218 inhibited tumor angiogenesis by targeting ROBO1 in gastric cancer. (PMID: 28323002) Zhang X. … Tie J. (Gene 2017) 3 64
  4. MicroRNA-218 regulates cisplatin (DPP) chemosensitivity in non-small cell lung cancer by targeting RUNX2. (PMID: 26282001) Xie J. … Lv Z. (Tumour Biol. 2016) 3 64
  5. MiR-218-5p inhibits the stem cell properties and invasive ability of the A2B5a8_CD133a8> subgroup of human glioma stem cells. (PMID: 26572167) Wu Z. … Du Z. (Oncol. Rep. 2016) 3 64

Products for MIR218-1 Gene

Sources for MIR218-1 Gene

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