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MIR217 Gene

RNA gene   GIFtS: 20
GCID: GC02M056210

MicroRNA 217


(Previous symbol: MIRN217)
  See MIR217-related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Subcategory (RNA class): miRNA

Quality score for this RNA gene is 9

Aliases
MicroRNA 2171 2
MIRN2171 2
mir-2172 9

External Ids:    HGNC: 315941   Entrez Gene: 4069992   Ensembl: ENSG000002075487   OMIM: 6150965   
ORGUL members:    fRNAdb10:FR232136      
miRBase: MI0000293 MIMAT0000274    
NCBI13:AJ550420    
NONCODE14:u3209    

Export aliases for MIR217 gene to outside databases

Previous GC identifer: GC02M056064


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MIR217 Gene:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of
gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are
transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can
be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme
to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the
cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The
mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through
imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of
the target mRNA. The RefSeq represents the predicted microRNA stem-loop. (provided by RefSeq, Sep 2009)

GeneCards Summary for MIR217 Gene:
MIR217 (microRNA 217) is an RNA gene, and is affiliated with the miRNA class. Diseases associated with MIR217 include pancreatic ductal adenocarcinoma.



fRNAdb sequence ontology for MIR217:
miRNA - Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors.

View fRNAdb secondary structures for MIR217

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for MIR217
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MIR217


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2p16.1   Ensembl cytogenetic band:  2p16.1   HGNC cytogenetic band: 2p16.1

MIR217 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIR217 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M056210:  view genomic region (via miRBase)     (about GC identifiers)

Start:
56,210,102 bp from pter      End:
56,210,211 bp from pter
Size:
110 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
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UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
MIR: ncRNAs / Micro RNAs

  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MIR217
Interactions:

    Search GeneGlobe Interaction Network for MIR217

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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1 fRNAdb Secondary structure:


1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000384817(miRNA)
miRNA
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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Expression evidence for MIR217:miRBase

See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --

MIR217 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for MIR217 gene from Selected species (see all 10)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chicken
(Gallus gallus)
Aves gga-mir-2176
gga-mir-217
93(a)
1 ↔ 1
3(298909-299015) ENSGALG00000018316
lizard
(Anolis carolinensis)
Reptilia aca-mir-2176
aca-mir-217
85(a)
1 ↔ 1
1(256233856-256233959) ENSACAG00000018761
zebrafish
(Danio rerio)
Actinopterygii dre-mir-2176
dre-mir-217
80(a)
1 ↔ 1
22(31336479-31336576) ENSDARG00000083272
        Species with no ortholog for MIR217

ENSEMBL Gene Tree for MIR217 (if available)
TreeFam Gene Tree for MIR217 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MIR217 (see all 68)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 2 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1914539951,2
--56209649(+) CTATGA/GTATTT 1 -- ds50010--------
rs102047981,2
C,F,H--56209797(+) AAACCG/AACAAA 1 -- ds500113Minor allele frequency- A:0.34NS EA NA WA CSA 557
rs2000438981,2
--56209797(+) AAACC-/GACAAA 1 -- ds50010--------
rs343808001,2
C,F--56209800(+) CCGAC-/A/AA  
  C
/GACA
AAAAA
1 -- ds50013NA 6
rs67568181,2
C,F,A,H--56209879(+) TTAGCT/AAGGAA 1 -- ds500117Minor allele frequency- A:0.32NA NS EA WA CSA 918
rs749963831,2
C,F--56209944(+) AGTGAT/CAAATC 1 -- ds50011Minor allele frequency- C:0.03NA 120
rs412911731,2
C,F--56210140(+) CTGATG/AGTGAC 1 -- nc-transcript-variant2Minor allele frequency- A:0.02NA EU 1429
rs1405092791,2
C--56210168(+) GTTCCC/TGATGC 1 -- nc-transcript-variant0--------
rs1504363681,2
C--56210207(+) TAATTA/GTACTA 1 -- nc-transcript-variant0--------
rs1382095321,2
C--56210218(+) AATATA/CATTTA 1 -- us2k10--------

HapMap Linkage Disequilibrium report for MIR217 (56210102 - 56210211 bp)

Structural Variations
     Database of Genomic Variants (DGV) 1 variation for MIR217:    About this table    
Variant IDTypeSubtypePubMed ID
dgv1186e1CNV Complex17122850

Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing MIR217
DNA2.0 Custom Variant and Variant Library Synthesis for MIR217

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 615096    OMIM disorders: --

1 disease for MIR217:    
About MalaCards
pancreatic ductal adenocarcinoma


Find genes that share disorders with MIR217           About GenesLikeMe


Export disorders for MIR217 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MIR217 gene, integrated from 10 sources (see all 14):
(articles sorted by number of sources associating them with MIR217)
    Utopia: connect your pdf to the dynamic
world of online information

  1. MicroRNA-217, down-regulated in clear cell renal cell carcinoma and associated with lower survival, suppresses cell proliferation and migration. (PubMed id 23790169)1 Li H....Ma W.M. (Neoplasma 2013)
  2. A microRNA signature defines chemoresistance in ovarian cancer through modulation of angiogenesis. (PubMed id 23697367)1 Vecchione A....Croce C.M. (Proc. Natl. Acad. Sci. U.S.A. 2013)
  3. Characterization of the uterine leiomyoma microRNAome by deep sequencing. (PubMed id 22446413)1 Georgieva B....Baev V. (Genomics 2012)
  4. MiR-217 is involved in Tat-induced HIV-1 long terminal repeat (LTR) transactivation by down-regulation of SIRT1. (PubMed id 22406815)1 Zhang H.S....Ruan Z. (Biochim. Biophys. Acta 2012)
  5. MicroRNA-217 promotes ethanol-induced fat accumulation in hepatocytes by down-regulating SIRT1. (PubMed id 22308024)1 Yin H....You M. (J. Biol. Chem. 2012)
  6. Clinical potential of microRNAs in pancreatic ductal adenocarcinoma. (PubMed id 22001830)1 Steele C.W....Jamieson N.B. (Pancreas 2011)
  7. Regulation of heme oxygenase-1 protein expression by miR-377 in combination with miR-217. (PubMed id 21106538)1 Beckman J.D....Vercellotti G.M. (J. Biol. Chem. 2011)
  8. The miR-217 microRNA functions as a potential tumor suppressor in pancreatic ductal adenocarcinoma by targeting KRAS. (PubMed id 20675343)1 Zhao W.G....Chen J. (Carcinogenesis 2010)
  9. MicroRNA 217 modulates endothelial cell senescence via silent information regulator 1. (PubMed id 19786632)1 Menghini R....Federici M. (Circulation 2009)
  10. A mammalian microRNA expression atlas based on small RNA library sequencing. (PubMed id 17604727)1 Landgraf P....Tuschl T. (Cell 2007)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 406999 HGNC: 31594 Ensembl:ENSG00000207548 miRBase: hsa-mir-217 euGenes: HUgn406999
ECgene: MIR217 H-InvDB: MIR217

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MIR217 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MIR217 gene:
Search GeneIP for patents involving MIR217

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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