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MIR212 Gene

RNA gene   GIFtS: 18
GCID: GC17M001962

MicroRNA 212


(Previous symbol: MIRN212)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Subcategory (RNA class): miRNA

Quality score for this RNA gene is 4.2

Aliases
MicroRNA 2121 2
MIRN2121 2 5
mir-2122 9

External Ids:    HGNC: 315891   Entrez Gene: 4069942   Ensembl: ENSG000002671957   OMIM: 6134875   
ORGUL members:    fRNAdb10:FR080734 FR310008 FR080734 FR027544      
miRBase:MI0000288 MIMAT0004148 MIMAT0000659 MIMAT0000883 MIMAT0000269 see all 6    
NCBI13:AJ550415    
NONCODE14:u3204    
RNAdb15:EVF42564    

Export aliases for MIR212 gene to outside databases

Previous GC identifers: GC17M001928 GC17M001931 GC17M001954 GC17M001959


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MIR212 Gene:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of
gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are
transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can
be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme
to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the
cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The
mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through
imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of
the target mRNA. The RefSeq represents the predicted microRNA stem-loop. (provided by RefSeq, Sep 2009)

GeneCards Summary for MIR212 Gene:
MIR212 (microRNA 212) is an RNA gene, and is affiliated with the miRNA class. Diseases associated with MIR212 include lung cancer, and retinoblastoma.



fRNAdb sequence ontologies for MIR212 - the ORGUL cluster for this gene includes several descriptions:
nc_conserved_region - Non-coding region of sequence similarity by descent from a common ancestor.
pre_miRNA - The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

View fRNAdb secondary structures for MIR212

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for MIR212
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for MIR212

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MIR212


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17p13.3   Ensembl cytogenetic band:  17p13.3   HGNC cytogenetic band: 17p13.3

MIR212 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIR212 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M001962:  view genomic region (via miRBase)     (about GC identifiers)

Start:
1,953,565 bp from pter      End:
1,953,674 bp from pter
Size:
110 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
MIR: ncRNAs / Micro RNAs

  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MIR212
Interactions:

    Search GeneGlobe Interaction Network for MIR212

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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2 fRNAdb Secondary structures:


1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000586026(miRNA)
miRNA
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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Expression evidence for MIR212:none

See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --

MIR212 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for MIR212 gene from Selected species (see all 5)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
zebrafish
(Danio rerio)
Actinopterygii dre-mir-2126
CU459076.16
(see all 3)
--
70(a)
69(a)
(see all 3)
many → 1
many → 1
(see all 3)
15(25232253-25232346) ENSDARG00000080565
10(36666208-36666301) ENSDARG00000080818
        Species with no ortholog for MIR212

ENSEMBL Gene Tree for MIR212 (if available)
TreeFam Gene Tree for MIR212 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MIR212 (see all 14)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 17 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs38038081,2
C,F--1943242(+) GGCTGG/AGATAC 1 -- ds50012Minor allele frequency- A:0.28NA EA 240
rs29579241,2
C--1943302(-) GCGCGG/TCCTGC 1 -- ds50018Minor allele frequency- T:0.07NA WA EA 368
rs566971201,2
C,F--1955375(+) AGGGGC/ACCCCA 1 -- us2k12Minor allele frequency- A:0.28NA EA 240
rs1416449901,2
--1955422(+) TTCCCA/GGAGAC 1 -- us2k10--------
rs1505023061,2
C--1955428(+) GAGACC/GAGAAT 1 -- us2k10--------
rs1398744691,2
--1955571(+) CTGGAC/TCAGGA 1 -- us2k10--------
rs1142527871,2
F--1955593(+) GTGCAA/CGGCAT 1 -- us2k11Minor allele frequency- C:0.05WA 118
rs72252001,2
C,A--1955662(+) GGCGGC/TCCTCA 1 -- us2k16Minor allele frequency- T:0.36NA WA EA 364
rs72127201,2
C,A--1955668(+) CCTCAG/CCCTGC 1 -- us2k14Minor allele frequency- C:0.49NA WA EA 360
rs72127231,2
C--1955669(+) CTCACA/CCTGCC 1 -- us2k15Minor allele frequency- C:0.39NA WA EA 362

HapMap Linkage Disequilibrium report for MIR212 (1953565 - 1953674 bp)

Structural Variations
     Database of Genomic Variants (DGV) 5 variations for MIR212:    About this table    
Variant IDTypeSubtypePubMed ID
dgv3035n71CNV Loss21882294
nsv907523CNV Loss21882294
nsv907526CNV Loss21882294
esv33884CNV Gain17666407
nsv827857CNV Gain20364138

Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing MIR212
DNA2.0 Custom Variant and Variant Library Synthesis for MIR212

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 613487    OMIM disorders: --

6 diseases for MIR212:    
About MalaCards
lung cancer    retinoblastoma    liver disease    pancreatic cancer
squamous cell carcinoma    pancreatitis


MIR212 for disorders           About GeneDecksing


Export disorders for MIR212 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MIR212 gene, integrated from 10 sources (see all 23):
(articles sorted by number of sources associating them with MIR212)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Down-regulation of inflammation-protective microRNAs 146a and 212 in monocytes of patients with postpartum psychosis. (PubMed id 23295264)1 Weigelt K....Drexhage H.A. (Brain Behav. Immun. 2013)
  2. Histone demethylase retinoblastoma binding protein 2 is overexpressed in hepatocellular carcinoma and negatively regulated by hsa-miR-212. (PubMed id 23922798)1 Liang X....Chen C. (PLoS ONE 2013)
  3. De-repression of FOXO3a death axis by microRNA-132 and -212 causes neuronal apoptosis in Alzheimer's disease. (PubMed id 23585551)1 Wong H.K....Krichevsky A.M. (Hum. Mol. Genet. 2013)
  4. Regulation of TLR2-mediated tolerance and cross-tolerance through IRAK4 modulation by miR-132 and miR-212. (PubMed id 23264652)1 Nahid M.A....Chan E.K. (J. Immunol. 2013)
  5. Genetic and epigenetic down-regulation of microRNA-212 promotes colorectal tumor metastasis via dysregulation of MnSOD. (PubMed id 23583431)1 Meng X....Huang W. (Gastroenterology 2013)
  6. The prognostic relevance of miR-212 expression with survival in cytogenetically and molecularly heterogeneous AML. (PubMed id 22692398)1 Sun S.M....Jongen-Lavrencic M. (Leukemia 2013)
  7. MicroRNA profiling in K-562 cells under imatinib treatment: influence of miR-212 and miR-328 on ABCG2 expression. (PubMed id 22241070)1 Turrini E....Cascorbi I. (Pharmacogenet. Genomics 2012)
  8. The miRNA-212/132 family regulates both cardiac hypertrophy and cardiomyocyte autophagy. (PubMed id 23011132)1 Ucar A....Thum T. (Nat Commun 2012)
  9. MicroRNA-212 displays tumor-promoting properties in non-small cell lung cancer cells and targets the hedgehog pathway receptor PTCH1. (PubMed id 22357618)1 Li Y....Huang Y. (Mol. Biol. Cell 2012)
  10. A novel dual-fluorescence strategy for functionally validating microRNA targets in 3' untranslated regions: regulation of the inward rectifier potassium channel K(ir)2.1 by miR-212. (PubMed id 22880819)1 Goldoni D....Collins A. (Biochem. J. 2012)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 406994 HGNC: 31589 Ensembl:ENSG00000267195 miRBase: hsa-mir-212 euGenes: HUgn406994
ECgene: MIR212 H-InvDB: MIR212

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MIR212 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MIR212 gene:
Search GeneIP for patents involving MIR212

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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