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Aliases for MIR20B Gene

Subcategory (RNA class) for MIR20B Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR20B Gene

  • MicroRNA 20b 2 3
  • Hsa-Mir-20b 3
  • MIRN20B 3

External Ids for MIR20B Gene

Previous Symbols for MIR20B Gene

  • MIRN20B

Summaries for MIR20B Gene

Entrez Gene Summary for MIR20B Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR20B Gene

MIR20B (MicroRNA 20b) is a RNA Gene, and belongs to miRNA RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR20B Gene

Genomics for MIR20B Gene

Genomic Location for MIR20B Gene

Start:
134,169,809 bp from pter
End:
134,169,877 bp from pter
Size:
69 bases
Orientation:
Minus strand

Genomic View for MIR20B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR20B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR20B Gene

No data available for Regulatory Elements for MIR20B Gene

Proteins for MIR20B Gene

Post-translational modifications for MIR20B Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR20B Gene

Domains for MIR20B Gene

Gene Families for MIR20B Gene

HGNC:
  • MIR :ncRNAs / Micro RNAs
genes like me logo Genes that share domains with MIR20B: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for MIR20B Gene

Function for MIR20B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR20B Gene

Localization for MIR20B Gene

No data available for Gene Ontology (GO) - Cellular Components for MIR20B Gene

Pathways for MIR20B Gene

SuperPathways for MIR20B Gene

No Data Available

Interacting Proteins for MIR20B Gene

Gene Ontology (GO) - Biological Process for MIR20B Gene

None

No data available for Pathways by source for MIR20B Gene

Transcripts for MIR20B Gene

mRNA/cDNA for MIR20B Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR20B Gene

No ASD Table

Relevant External Links for MIR20B Gene

GeneLoc Exon Structure for
MIR20B
ECgene alternative splicing isoforms for
MIR20B

Expression for MIR20B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

genes like me logo Genes that share expressions with MIR20B: view

Orthologs for MIR20B Gene

This gene was present in the common ancestor of chordates.

Orthologs for MIR20B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-20b 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia bta-mir-20b 37
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia cfa-mir-20b 37
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mir20b 37
  • 74 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia mdo-mir-20b 37
  • 61 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia oan-mir-20b 37
  • 55 (a)
OneToOne
chicken
(Gallus gallus)
Aves gga-mir-20b 37
  • 66 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia aca-mir-20b 37
  • 55 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii dre-mir-20b 37
  • 54 (a)
OneToOne
Species with no ortholog for MIR20B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MIR20B Gene

ENSEMBL:
Gene Tree for MIR20B (if available)
TreeFam:
Gene Tree for MIR20B (if available)

Paralogs for MIR20B Gene

No data available for Paralogs for MIR20B Gene

Variants for MIR20B Gene

Relevant External Links for MIR20B Gene

HapMap Linkage Disequilibrium report
MIR20B

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for MIR20B Gene

Disorders for MIR20B Gene

No disorders were found for MIR20B Gene.

No data available for UniProtKB/Swiss-Prot for MIR20B Gene

Publications for MIR20B Gene

  1. c-Myc-regulated microRNAs modulate E2F1 expression. (PMID: 15944709) O'Donnell K.A. … Mendell J.T. (Nature 2005) 3
  2. Identification of hundreds of conserved and nonconserved human microRNAs. (PMID: 15965474) Bentwich I. … Bentwich Z. (Nat. Genet. 2005) 3
  3. Identification of clustered microRNAs using an ab initio prediction method. (PMID: 16274478) Sewer A. … Zavolan M. (BMC Bioinformatics 2005) 3
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  5. A mammalian microRNA expression atlas based on small RNA library sequencing. (PMID: 17604727) Landgraf P. … Tuschl T. (Cell 2007) 3

Products for MIR20B Gene

Sources for MIR20B Gene

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