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MIR206 Gene

RNA gene   GIFtS: 27
GCID: GC06P052009

MicroRNA 206


(Previous symbol: MIRN206)
  See MIR206-related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Subcategory (RNA class): miRNA

Quality score for this RNA gene is 3

Aliases
MicroRNA 2061 2
MIRN2061 2 5
miRNA2062
mir-2069

External Ids:    HGNC: 315841   Entrez Gene: 4069892   Ensembl: ENSG000002076047   OMIM: 6115995   
ORGUL members:    fRNAdb10:FR000691 FR390642 FR187307 FR398006      

Export aliases for MIR206 gene to outside databases

Previous GC identifer: GC06P052120


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MIR206 Gene:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of
gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are
transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can
be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme
to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the
cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The
mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through
imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of
the target mRNA. The RefSeq represents the predicted microRNA stem-loop. (provided by RefSeq, Sep 2009)

GeneCards Summary for MIR206 Gene:
MIR206 (microRNA 206) is an RNA gene, and is affiliated with the miRNA class. Diseases associated with MIR206 include myotonic dystrophy type 1.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for MIR206
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MIR206


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p12.2   Ensembl cytogenetic band:  6p12.2   HGNC cytogenetic band: 6p12.2

MIR206 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIR206 gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06P052009:  view genomic region (via miRBase)     (about GC identifiers)

Start:
52,009,147 bp from pter      End:
52,009,232 bp from pter
Size:
86 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
MIR: ncRNAs / Micro RNAs

  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for MIR206 About    
See pathways by source

SuperPathContained pathways About
1miRs in Muscle Cell Differentiation
miRs in Muscle Cell Differentiation
2MicroRNAs in cancer
MicroRNAs in cancer
3Glial Cell Differentiation
Glial Cell Differentiation


Find genes that share SuperPaths with MIR206           About GenesLikeMe

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways


2 BioSystems Pathways for MIR206
    Glial Cell Differentiation
miRs in Muscle Cell Differentiation


1 Kegg Pathway  (Kegg details for MIR206):
    MicroRNAs in cancer

    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MIR206
Interactions:

    Search GeneGlobe Interaction Network for MIR206

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
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Browse Tocris compounds for MIR206



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000384872(miRNA)
miRNA
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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Expression evidence for MIR206:none

See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --

MIR206 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
    Custom PCR Arrays for MIR206
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In Situ
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for MIR206 gene from Selected species (see all 9)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chicken
(Gallus gallus)
Aves gga-mir-2066
gga-mir-206
88(a)
1 ↔ 1
3(107213960-107214035) ENSGALG00000018322
lizard
(Anolis carolinensis)
Reptilia aca-mir-2066
aca-mir-206
86(a)
1 ↔ 1
1(122853036-122853111)
zebrafish
(Danio rerio)
Actinopterygii dre-mir-206-16
dre-mir-206-26
dre-mir-206-2
63(a)
60(a)
1 ↔ many
1 ↔ many
20(19616808-19616906)
17(5730402-5730510)
        Species with no ortholog for MIR206

ENSEMBL Gene Tree for MIR206 (if available)
TreeFam Gene Tree for MIR206 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MIR206 (see all 53)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 6 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs117572421,2
H--52007298(+) TCACCC/ATACAA 1 -- us2k14Minor allele frequency- A:0.00NS EA 418
rs624085821,2
C,F--52007349(+) TTGGGG/AACAGT 1 -- us2k11Minor allele frequency- A:0.50NA 2
rs1420439561,2
--52007464(+) AATAGC/GAAGTC 1 -- us2k10--------
rs1837766401,2
--52007467(+) AGCAAG/TTCTCT 1 -- us2k10--------
rs1511462551,2
--52007511(+) AACTTC/GATGGT 1 -- us2k10--------
rs1881642131,2
--52007573(+) TTGGAA/GGATCT 1 -- us2k10--------
rs773273321,2
--52007582(+) CTCCAC/TCTGAC 1 -- us2k10--------
rs23970801,2
C,F,O,A,H--52007886(+) AGCCAT/CTGGAT 1 -- us2k18Minor allele frequency- C:0.19NA WA CSA EA 504
rs1485948741,2
C--52007899(+) TTCCC-/AAGGTC 1 -- us2k10--------
rs42664951,2
H--52007971(+) GGTTTC/TTAAGC 1 -- us2k14Minor allele frequency- T:0.00NS EA 418

HapMap Linkage Disequilibrium report for MIR206 (52009147 - 52009232 bp)

Structural Variations
     Database of Genomic Variants (DGV) 2 variations for MIR206:    About this table    
Variant IDTypeSubtypePubMed ID
nsv522645CNV Gain19592680
nsv830662CNV Gain17160897

Human Gene Mutation Database (HGMD): MIR206
Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing MIR206
DNA2.0 Custom Variant and Variant Library Synthesis for MIR206

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 611599    OMIM disorders: --

1 disease for MIR206:    
About MalaCards
myotonic dystrophy type 1


Find genes that share disorders with MIR206           About GenesLikeMe

Genetic Association Database (GAD): MIR206
Human Genome Epidemiology (HuGE) Navigator: MIR206 (2 documents)

Export disorders for MIR206 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MIR206 gene, integrated from 10 sources (see all 34):
(articles sorted by number of sources associating them with MIR206)
    Utopia: connect your pdf to the dynamic
world of online information

  1. MicroRNAs and target site screening reveals a pre-microRNA-30e variant associated with schizophrenia. (PubMed id 20347265)1, 4 Xu Y....Liu P. (Schizophr. Res. 2010)
  2. Roles of microRNA-206 in osteosarcoma pathogenesis and progression. (PubMed id 23886177)1 Bao Y.P....Luo H.S. (Asian Pac. J. Cancer Prev. 2013)
  3. Downregulation of microRNA-206 is a potent prognostic marker for patients with gastric cancer. (PubMed id 23751352)1 Yang Q....Wang J. (amp 2013)
  4. MicroRNA-1 and microRNA-206 suppress LXRI+-induced lipogenesis in hepatocytes. (PubMed id 23499676)1 Zhong D....He F. (Cell. Signal. 2013)
  5. miR-206 inhibits gastric cancer proliferation in part by repressing cyclinD2. (PubMed id 23348698)1 Zhang L....Fan D. (Cancer Lett. 2013)
  6. Decreased expression of microRNA-206 in breast cancer and its association with disease characteristics and patient survival. (PubMed id 23696595)1 Li Y....Yu Z. (J. Int. Med. Res. 2013)
  7. miR-206 is down-regulated in breast cancer and inhibits cell proliferation through the up-regulation of cyclinD2. (PubMed id 23466356)1 Zhou J....Ji G. (Biochem. Biophys. Res. Commun. 2013)
  8. Transcription factor NRF2 regulates miR-1 and miR-206 to drive tumorigenesis. (PubMed id 23921124)1 Singh A....Biswal S. (J. Clin. Invest. 2013)
  9. Expression of the tumor suppressor miR-206 is associated with cellular proliferative inhibition and impairs invasion in ERI+-positive endometrioid adenocarcinoma. (PubMed id 21983130)1 Chen X....Wan X. (Cancer Lett. 2012)
  10. Hmgb3 is regulated by microRNA-206 during muscle regeneration. (PubMed id 22912879)1 Maciotta S....Torrente Y. (PLoS ONE 2012)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 406989 HGNC: 31584 Ensembl:ENSG00000207604 miRBase: hsa-mir-206 euGenes: HUgn406989
ECgene: MIR206 Kegg: 406989 H-InvDB: MIR206

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MIR206 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MIR206 gene:
Search GeneIP for patents involving MIR206

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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