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Aliases for MIR205HG Gene

Subcategory (RNA class) for MIR205HG Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR205HG Gene

  • MIR205 Host Gene 2 3 5
  • Long Intergenic Non-Protein Coding RNA 510 2 3
  • MIR205 Host Gene (Non-Protein Coding) 2 3
  • Uncharacterized Protein LOC642587 3
  • LINC00510 3
  • NPC-A-5 3

External Ids for MIR205HG Gene

Previous GeneCards Identifiers for MIR205HG Gene

  • GC01P209604
  • GC01P209606

Summaries for MIR205HG Gene

GeneCards Summary for MIR205HG Gene

MIR205HG (MIR205 Host Gene) is an RNA Gene, and is affiliated with the miRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR205HG Gene

Genomics for MIR205HG Gene

Regulatory Elements for MIR205HG Gene

Enhancers for MIR205HG Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F209644 1.9 FANTOM5 Ensembl ENCODE 9.3 +224.2 224175 16.6 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 G0S2 LAMB3 HSD11B1 LOC101930114 CAMK1G ENSG00000224260 MIR205 MIR205HG IRF6 TRAF3IP3
GH01F209403 1.4 FANTOM5 Ensembl ENCODE 12 -23.7 -23721 3.7 CTCF BMI1 ZIC2 RAD21 ZNF366 SCRT2 PATZ1 SMC3 PRDM10 CREM MIR205 MIR205HG LAMB3 ENSG00000224260 IRF6 TFDP1P HSD11B1 LINC01698
GH01F209396 1.4 FANTOM5 Ensembl ENCODE 11.9 -30.2 -30177 4.0 MAX ZIC2 RFX5 YY1 ZNF316 ELK1 NFE2 MAFK TCF7L2 NFE2L2 MIR205 MIR205HG TFDP1P LAMB3 LINC01698
GH01F209354 1.4 FANTOM5 Ensembl ENCODE 11.7 -73.0 -73034 3.5 CTCF TFAP4 WRNIP1 ZNF384 YBX1 PLRG1 RAD21 RFX5 ZNF316 GATA3 MIR205 MIR205HG TFDP1P ENSG00000224260 IRF6 LAMB3 LINC01698 LINC01696
GH01F209382 1.3 FANTOM5 Ensembl ENCODE 11.7 -42.0 -42010 8.8 JUN BHLHE40 MCM5 CEBPB SIN3A ZNF704 EP300 GATA3 JUND SMARCA4 LAMB3 SERTAD4-AS1 MIR205 MIR205HG IRF6 TFDP1P LINC01698
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR205HG on UCSC Golden Path with GeneCards custom track

Promoters for MIR205HG Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000552123 980 1601 CTCF ZNF654 ZBED1 SMC3 TRIM22 REST RAD21 MAFK

Genomic Location for MIR205HG Gene

Chromosome:
1
Start:
209,428,820 bp from pter
End:
209,432,838 bp from pter
Size:
4,019 bases
Orientation:
Plus strand

Genomic View for MIR205HG Gene

Genes around MIR205HG on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR205HG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR205HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR205HG Gene

Proteins for MIR205HG Gene

Post-translational modifications for MIR205HG Gene

No Post-translational modifications

Other Protein References for MIR205HG Gene

REFSEQ proteins:

No data available for DME Specific Peptides for MIR205HG Gene

Domains & Families for MIR205HG Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR205HG Gene

Function for MIR205HG Gene

Phenotypes for MIR205HG Gene

GenomeRNAi human phenotypes for MIR205HG:
genes like me logo Genes that share phenotypes with MIR205HG: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR205HG Gene

Localization for MIR205HG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR205HG Gene

Pathways & Interactions for MIR205HG Gene

SuperPathways for MIR205HG Gene

No Data Available

Interacting Proteins for MIR205HG Gene

Gene Ontology (GO) - Biological Process for MIR205HG Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR205HG Gene

Transcripts for MIR205HG Gene

mRNA/cDNA for MIR205HG Gene

(2) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(11) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MIR205HG Gene

MIR205 host gene (non-protein coding):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR205HG Gene

No ASD Table

Relevant External Links for MIR205HG Gene

GeneLoc Exon Structure for
MIR205HG
ECgene alternative splicing isoforms for
MIR205HG

Expression for MIR205HG Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR205HG Gene

mRNA differential expression in normal tissues according to GTEx for MIR205HG Gene

This gene is overexpressed in Esophagus - Mucosa (x12.0), Skin - Not Sun Exposed (Suprapubic) (x9.3), Skin - Sun Exposed (Lower leg) (x8.6), Vagina (x6.2), and Prostate (x4.6).

NURSA nuclear receptor signaling pathways regulating expression of MIR205HG Gene:

MIR205HG

SOURCE GeneReport for Unigene cluster for MIR205HG Gene:

Hs.510543
genes like me logo Genes that share expression patterns with MIR205HG: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR205HG Gene

Orthologs for MIR205HG Gene

Evolution for MIR205HG Gene

ENSEMBL:
Gene Tree for MIR205HG (if available)
TreeFam:
Gene Tree for MIR205HG (if available)

No data available for Orthologs for MIR205HG Gene

Paralogs for MIR205HG Gene

No data available for Paralogs for MIR205HG Gene

Variants for MIR205HG Gene

Sequence variations from dbSNP and Humsavar for MIR205HG Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1045727 -- 209,428,992(-) GTAAG(A/C)AGAGG utr-variant-5-prime
rs1045735 -- 209,432,448(-) TGCGG(G/T)GCTTT downstream-variant-500B, utr-variant-3-prime
rs10569384 -- 209,428,454(+) GCGCG(-/CA)CACAC upstream-variant-2KB
rs10779505 -- 209,429,036(+) CGCCC(A/G)GGCAG utr-variant-5-prime
rs10779506 -- 209,430,015(+) AGGAC(C/G)TGGTT intron-variant

Relevant External Links for MIR205HG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR205HG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR205HG Gene

Disorders for MIR205HG Gene

Relevant External Links for MIR205HG

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR205HG

No disorders were found for MIR205HG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR205HG Gene

Publications for MIR205HG Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for MIR205HG Gene

Sources for MIR205HG Gene

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