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MIR200B Gene

RNA gene   GIFtS: 23
GCID: GC01P001127

MicroRNA 200b


(Previous symbol: MIRN200B)
  See MIR200B-related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Subcategory (RNA class): miRNA

Quality score for this RNA gene is 3

Aliases
MicroRNA 200b1 2
MIRN200B1 2 5
mir-200b9

External Ids:    HGNC: 315791   Entrez Gene: 4069842   Ensembl: ENSG000002077307   OMIM: 6120915   
ORGUL members:    fRNAdb10:FR134845 FR227560      

Export aliases for MIR200B gene to outside databases

Previous GC identifers: GC01P001100 GC01P001103 GC01P001106 GC01P001114


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MIR200B Gene:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of
gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are
transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can
be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme
to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the
cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The
mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through
imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of
the target mRNA. The RefSeq represents the predicted microRNA stem-loop. (provided by RefSeq, Sep 2009)

GeneCards Summary for MIR200B Gene:
MIR200B (microRNA 200b) is an RNA gene, and is affiliated with the miRNA class. Diseases associated with MIR200B include endometrial adenocarcinoma, and lung adenocarcinoma.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for MIR200B
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MIR200B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p36.33   Ensembl cytogenetic band:  1p36.33   HGNC cytogenetic band: 1p36.33

MIR200B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIR200B gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P001127:  view genomic region (via miRBase)     (about GC identifiers)

Start:
1,102,484 bp from pter      End:
1,102,578 bp from pter
Size:
95 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
MIR: ncRNAs / Micro RNAs

  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:
   genOway: Develop your customized and physiologically relevant rodent model for MIR200B

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for MIR200B About    
See pathways by source

SuperPathContained pathways About
1MicroRNAs in cancer
MicroRNAs in cancer


Find genes that share SuperPaths with MIR200B           About GenesLikeMe

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways



1 Kegg Pathway  (Kegg details for MIR200B):
    MicroRNAs in cancer

    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MIR200B
Interactions:

    Search GeneGlobe Interaction Network for MIR200B

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
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Browse Tocris compounds for MIR200B



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000384997(miRNA)
miRNA
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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Expression evidence for MIR200B:none

See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --

MIR200B Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
    Custom PCR Arrays for MIR200B
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for MIR200B gene from Selected species (see all 9)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chicken
(Gallus gallus)
Aves gga-mir-200b6
gga-mir-200b
67(a)
1 ↔ 1
21(2600252-2600336) ENSGALG00000018295
lizard
(Anolis carolinensis)
Reptilia aca-mir-200b6
aca-mir-200b
70(a)
1 ↔ 1
GL343647.1(274649-274734)
zebrafish
(Danio rerio)
Actinopterygii dre-mir-200b6
dre-mir-200b
72(a)
1 ↔ 1
23(24358912-24358993) ENSDARG00000081868
        Species with no ortholog for MIR200B

ENSEMBL Gene Tree for MIR200B (if available)
TreeFam Gene Tree for MIR200B (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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8 SNPs for MIR200B    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 1 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1809374811,2
--1100508(+) TCTCGA/GAAAAC 1 -- us2k10--------
rs797764911,2
C,F--1100524(+) AGGTCC/TGTTTT 1 -- us2k12Minor allele frequency- T:0.10CSA WA 120
rs1176461111,2
F--1100699(+) GGGTCG/AGCCTC 1 -- us2k11Minor allele frequency- A:0.04EA 120
rs767911931,2
C,F--1100857(+) CTCCCG/AGGTGA 1 -- us2k11Minor allele frequency- A:0.17WA 118
rs75498191,2
C,F,A,H--1101003(+) CCGTCT/CGCCGG 1 -- us2k112Minor allele frequency- C:0.21NA WA CSA EA 374
rs3686956001,2
----1100910(+) GGCCCA/TTGGGG 1 -- us2k10--------
rs3714058551,2
----1100490(+) GAAAGC/TCCGCG 1 -- us2k10--------
rs1116278141,2
----1100633(+) AATCCC/TTGGTC 1 -- us2k11Minor allele frequency- T:0.50CSA 2

HapMap Linkage Disequilibrium report for MIR200B (1102484 - 1102578 bp)

Structural Variations
     Database of Genomic Variants (DGV) Selected variations for MIR200B (see all 23):    About this table    
Variant IDTypeSubtypePubMed ID
nsv509257CNV Insertion20534489
dgv17n71CNV Loss21882294
nsv470680CNV Loss18288195
nsv482937CNV Loss15286789
dgv12n71CNV Loss21882294
dgv21n71CNV Loss21882294
dgv19n71CNV Loss21882294
dgv10n71CNV Loss21882294
dgv13n71CNV Loss21882294
dgv20n71CNV Loss21882294

Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing MIR200B
DNA2.0 Custom Variant and Variant Library Synthesis for MIR200B

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 612091    OMIM disorders: --

2 diseases for MIR200B:    
About MalaCards
endometrial adenocarcinoma    lung adenocarcinoma


Find genes that share disorders with MIR200B           About GenesLikeMe


Export disorders for MIR200B gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MIR200B gene, integrated from 10 sources (see all 50):
(articles sorted by number of sources associating them with MIR200B)
    Utopia: connect your pdf to the dynamic
world of online information

  1. WASF3 regulates miR-200 inactivation by ZEB1 through suppression of KISS1 leading to increased invasiveness in breast cancer cells. (PubMed id 23318438)1 Teng Y....Cowell J.K. (Oncogene 2014)
  2. MicroRNAs regulate both epithelial-to-mesenchymal transition and cancer stem cells. (PubMed id 23455327)1 Ceppi P. and Peter M.E. (Oncogene 2014)
  3. Analyses in human urothelial cells identify methylation of miR-152, miR-200b and miR-10a genes as candidate bladder cancer biomarkers. (PubMed id 23867826)1 KAPhler C.U....KAofferlein H.U. (Biochem. Biophys. Res. Commun. 2013)
  4. The microRNA-200 family targets multiple non-small cell lung cancer prognostic markers in H1299 cells and BEAS-2B cells. (PubMed id 23708087)1 Pacurari M....Guo N.L. (Int. J. Oncol. 2013)
  5. Kindlin 2 promotes breast cancer invasion via epigenetic silencing of the microRNA200 gene family. (PubMed id 23483548)1 Yu Y....Zhang H. (Int. J. Cancer 2013)
  6. Regulation of the microRNA 200b (miRNA-200b) by transcriptional regulators PEA3 and ELK-1 protein affects expression of Pin1 protein to control anoikis. (PubMed id 24072701)1 Zhang X....Liu Z. (J. Biol. Chem. 2013)
  7. MicroRNA-200b targets CREB1 and suppresses cell growth in human malignant glioma. (PubMed id 23543137)1 Peng B....Li D. (Mol. Cell. Biochem. 2013)
  8. Down-regulation of miR-200b-3p by low p73 contributes to the androgen-independence of prostate cancer cells. (PubMed id 23389960)1 He M....Zhao M. (Prostate 2013)
  9. microRNA expression profile in a large series of bladder tumors: identification of a 3-miRNA signature associated with aggressiveness of muscle-invasive bladder cancer. (PubMed id 23169479)1 Pignot G....Bieche I. (Int. J. Cancer 2013)
  10. miRNA and mRNA expression profiling identifies members of the miR-200 family as potential regulators of epithelial-mesenchymal transition in pterygium. (PubMed id 23872359)1 Engelsvold D.H....Raeder S. (Exp. Eye Res. 2013)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 406984 HGNC: 31579 Ensembl:ENSG00000207730 miRBase: hsa-mir-200b euGenes: HUgn406984
ECgene: MIR200B Kegg: 406984 H-InvDB: MIR200B

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MIR200B Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MIR200B gene:
Search GeneIP for patents involving MIR200B

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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