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MIR196B Gene

RNA gene   GIFtS: 19
GCID: GC07M027209

MicroRNA 196b


(Previous symbol: MIRN196B)
  See related diseases
at
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Aliases
for MIR196B gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Subcategory (RNA class): miRNA

Quality score for this RNA gene is 3

Aliases
MicroRNA 196b1 2
MIRN196B1 2 5
miR-196b2
miRNA196B2
mir-196b9

External Ids:    HGNC: 317901   Entrez Gene: 4429202   Ensembl: ENSG000002075847   OMIM: 6096885   

Export aliases for MIR196B gene to outside databases

Previous GC identifer: GC07M027177


Summaries
for MIR196B gene

(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MIR196B Gene:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of
gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are
transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can
be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme
to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the
cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The
mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through
imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of
the target mRNA. The RefSeq represents the predicted microRNA stem-loop. (provided by RefSeq, Sep 2009)

GeneCards Summary for MIR196B Gene:
MIR196B (microRNA 196b) is an RNA gene, and is affiliated with the miRNA class. Diseases associated with MIR196B include acute myeloid leukemia, and hepatitis c virus.




Genomic Views
for MIR196B gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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TryGeneCards Plus		 Regulatory elements:
   Search for regulatory transcription factor binding sites for MIR196B
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MIR196B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7p15.2   Ensembl cytogenetic band:  7p15.2   HGNC cytogenetic band: 7p15.2

MIR196B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIR196B gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07M027209:  view genomic region (via miRBase)     (about GC identifiers)

Start:
 27,209,099 bp from pter      End:
 27,209,183 bp from pter
Size:
 85 bases      Orientation:
 minus strand

1 alternative location:
Chr7-,CRA_TCAG 27,260,284-27,260,367     

Proteins
for MIR196B gene

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB: --

Domains /
Families
for MIR196B gene

(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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TryGeneCards Plus		 HGNC Gene Families:
MIR: ncRNAs / Micro RNAs

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Function
for MIR196B gene

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Cell Line
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Localization
for MIR196B gene

(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Pathways & Interactions
for MIR196B gene

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MIR196B
Interactions:

    Search GeneGlobe Interaction Network for MIR196B

Drugs & Compounds
for MIR196B gene

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
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Browse Tocris compounds for MIR196B



Transcripts
for MIR196B gene

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000384852(miRNA)
miRNA
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Inhib. RNA
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Primer
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GeneLoc Exon Structure


Expression
for MIR196B gene

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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Expression evidence for MIR196B:none

MIR196B expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
MIR196B Expression
About this image

MIR196B Protein expression data from MOPED1, PaxDb2 and MaxQB3:  --
    Custom PCR Arrays for MIR196B
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In Situ
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Orthologs
for MIR196B gene

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for MIR196B gene from Selected species (see all 9)    About this table
Organism Taxonomic
classification		 Gene Description Human
Similarity		 Orthology
Type		 Details
chicken
(Gallus gallus)		 Aves gga-mir-196-26
 gga-mir-196-2
 76(a)
 many ↔ many
 2(32977426-32977519) ENSGALG00000028343
lizard
(Anolis carolinensis)		 Reptilia aca-mir-196a-16
 aca-mir-196a-1
 81(a)
 1 ↔ 1
 GL343275.1(1429543-1429631) ENSACAG00000018343
zebrafish
(Danio rerio)		 Actinopterygii mir196a-26
 microRNA 196a-2
 63(a)
 many ↔ many
 19(19213364-19213439) ENSDARG00000081004
        Species with no ortholog for MIR196B

ENSEMBL Gene Tree for MIR196B (if available)
TreeFam Gene Tree for MIR196B (if available)

Paralogs
for MIR196B gene

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Genomic Variants
for MIR196B gene

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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TryGeneCards Plus		Structural Variations
     Database of Genomic Variants (DGV) Selected variations for MIR196B (see all 11):    About this table    
Variant IDTypeSubtypePubMed ID
nsv887856CNV Loss21882294
dgv7239n71CNV Loss21882294
dgv7233n71CNV Loss21882294
dgv7237n71CNV Loss21882294
dgv7231n71CNV Loss21882294
dgv7236n71CNV Loss21882294
dgv7234n71CNV Loss21882294
dgv7238n71CNV Loss21882294
nsv824042CNV Gain20364138
dgv1094n67CNV Gain20364138

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Disorders / Diseases
for MIR196B gene

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 609688    OMIM disorders: --

13 diseases for MIR196B:    
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acute myeloid leukemia    hepatitis c virus    nasopharyngitis    lymphoblastic leukemia
cervical cancer    hepatitis c    myeloid leukemia    cervicitis
leukemia    hepatitis    neuronitis    hepatocellular carcinoma
endotheliitis


MIR196B for disorders           About GeneDecksing


Export disorders for MIR196B gene to outside databases

Publications
for MIR196B gene

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MIR196B gene, integrated from 10 sources (see all 24):
(articles sorted by number of sources associating them with MIR196B)		    Utopia: connect your pdf to the dynamic
world of online information

  1. Therapeutic antagonists of microRNAs deplete leukemia-initiating cell activity. (PubMed id 24334453)1 Velu C.S....Grimes H.L. (J. Clin. Invest. 2014)
  2. MicroRNAs regulate tumor angiogenesis modulated by endothelial progenitor cells. (PubMed id 22836757)1 Plummer P.N....Mellick A.S. (Cancer Res. 2013)
  3. miR-196b targets c-myc and Bcl-2 expression, inhibits proliferation and induces apoptosis in endometriotic stromal cells. (PubMed id 23293219)1 Abe W....Narahara H. (Hum. Reprod. 2013)
  4. Low expression of miR-196b enhances the expression of BCR-ABL1 and HOXA9 oncogenes in chronic myeloid leukemogenesis. (PubMed id 23894305)1 Liu Y....Yin H. (PLoS ONE 2013)
  5. MicroRNA-196b regulates the homeobox B7-vascular endothelial growth factor axis in cervical cancer. (PubMed id 23861821)1 How C....Liu F.F. (PLoS ONE 2013)
  6. Transcriptional regulation of miR-196b by ETS2 in gastric cancer cells. (PubMed id 22298639)1 Liao Y.L....Lin W.C. (Carcinogenesis 2012)
  7. Differential miRNA expression in childhood acute lymphoblastic leukemia and association with clinical and biological features. (PubMed id 22099053)1 de Oliveira J.C....Tone L.G. (Leuk. Res. 2012)
  8. miR-196b directly targets both HOXA9/MEIS1 oncogenes and FAS tumour suppressor in MLL-rearranged leukaemia. (PubMed id 22353710)1 Li Z....Chen J. (Nat Commun 2012)
  9. Upregulation of miR-196b confers a poor prognosis in glioblastoma patients via inducing a proliferative phenotype. (PubMed id 22723849)1 Ma R....Kang X. (PLoS ONE 2012)
  10. Genome-wide aberrant DNA methylation of microRNA host genes in hepatocellular carcinoma. (PubMed id 22976466)1 Shen J....Santella R.M. (Epigenetics 2012)

External Searches for MIR196B gene

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  
  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

Genome Databases showing MIR196B gene

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 442920 HGNC: 31790 Ensembl:ENSG00000207584 miRBase: hsa-mir-196b euGenes: HUgn442920
ECgene: MIR196B H-InvDB: MIR196B

Other Databases showing MIR196B gene

(According to HUGE)
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Specialized Databases showing MIR196B gene

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MIR196B Pharmacogenomics, SNPs, Pathways

Intellectual Property
for MIR196B gene

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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TryGeneCards Plus		Patent Information for MIR196B gene:
Search GeneIP for patents involving MIR196B

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



Products
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