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Aliases for MIR190B Gene

Subcategory (RNA class) for MIR190B Gene

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Quality Score for this RNA gene is

3.2

Aliases for MIR190B Gene

  • MicroRNA 190b 2 3
  • Hsa-Mir-190b 3
  • MIRN190B 3

External Ids for MIR190B Gene

Previous Symbols for MIR190B Gene

  • MIRN190B

Summaries for MIR190B Gene

Entrez Gene Summary for MIR190B Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR190B Gene

MIR190B (MicroRNA 190b) is a RNA Gene, and belongs to undefined RNA class.

fRNAdb sequence ontologies for MIR190B Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for MIR190B

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR190B Gene

Genomics for MIR190B Gene

Genomic Location for MIR190B Gene

Start:
154,193,642 bp from pter
End:
154,193,753 bp from pter
Size:
112 bases
Orientation:
Minus strand

Genomic View for MIR190B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR190B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR190B Gene

ORGUL Member Location for MIR190B Gene

ORGUL Member Location for MIR190B gene

No data available for Regulatory Elements for MIR190B Gene

Proteins for MIR190B Gene

Post-translational modifications for MIR190B Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR190B Gene

Domains for MIR190B Gene

Gene Families for MIR190B Gene

HGNC:
  • MIR :ncRNAs / Micro RNAs
genes like me logo Genes that share domains with MIR190B: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for MIR190B Gene

Function for MIR190B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR190B Gene

Localization for MIR190B Gene

No data available for Gene Ontology (GO) - Cellular Components for MIR190B Gene

Pathways for MIR190B Gene

SuperPathways for MIR190B Gene

No Data Available

Interacting Proteins for MIR190B Gene

Gene Ontology (GO) - Biological Process for MIR190B Gene

None

No data available for Pathways by source for MIR190B Gene

Transcripts for MIR190B Gene

fRNAdb Secondary structures for MIR190B Gene

  • FR262354

mRNA/cDNA for MIR190B Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR190B Gene

No ASD Table

Relevant External Links for MIR190B Gene

GeneLoc Exon Structure for
MIR190B
ECgene alternative splicing isoforms for
MIR190B

Expression for MIR190B Gene

No Expression Related Data Available

Orthologs for MIR190B Gene

This gene was present in the common ancestor of chordates.

Orthologs for MIR190B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-190b 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia bta-mir-190b 37
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia cfa-mir-190b 37
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mir190b 37
  • 90 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia mdo-mir-190b 37
  • 92 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia oan-mir-190b 37
  • 42 (a)
ManyToMany
chicken
(Gallus gallus)
Aves -- 37
  • 79 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii dre-mir-190b 37
  • 61 (a)
ManyToMany
Species with no ortholog for MIR190B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MIR190B Gene

ENSEMBL:
Gene Tree for MIR190B (if available)
TreeFam:
Gene Tree for MIR190B (if available)

Paralogs for MIR190B Gene

No data available for Paralogs for MIR190B Gene

Variants for MIR190B Gene

Sequence variations from dbSNP and Humsavar for MIR190B Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs4072431 -- 154,194,640(+) ATGGG(A/G)AATTT upstream-variant-2KB
rs4074015 -- 154,195,150(-) AGCCT(C/G)TCTTC upstream-variant-2KB
rs4364874 -- 154,195,312(+) TGATA(A/C)AAGCC upstream-variant-2KB
rs35157145 -- 154,194,594(+) GTTCT(-/G)CCAAG upstream-variant-2KB
rs35943719 -- 154,195,021(+) CTTTT(-/T)GGCTC upstream-variant-2KB

Relevant External Links for MIR190B Gene

HapMap Linkage Disequilibrium report
MIR190B

No data available for Structural Variations from Database of Genomic Variants (DGV) for MIR190B Gene

Disorders for MIR190B Gene

No disorders were found for MIR190B Gene.

No data available for UniProtKB/Swiss-Prot for MIR190B Gene

Publications for MIR190B Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. A mammalian microRNA expression atlas based on small RNA library sequencing. (PMID: 17604727) Landgraf P. … Tuschl T. (Cell 2007) 3

Products for MIR190B Gene

Sources for MIR190B Gene

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