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Aliases for MIR1825 Gene

Subcategory (RNA class) for MIR1825 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR1825 Gene

  • MicroRNA 1825 2 3 5
  • Hsa-Mir-1825 3
  • MIRN1825 3

External Ids for MIR1825 Gene

Previous HGNC Symbols for MIR1825 Gene

  • MIRN1825

Previous GeneCards Identifiers for MIR1825 Gene

  • GC00U923067
  • GC20P030290
  • GC20P030825

Summaries for MIR1825 Gene

Entrez Gene Summary for MIR1825 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR1825 Gene

MIR1825 (MicroRNA 1825) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are Pre-NOTCH Expression and Processing and Signaling by NOTCH1.

Additional gene information for MIR1825 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR1825 Gene

Genomics for MIR1825 Gene

GeneHancer (GH) Regulatory Elements for MIR1825 Gene

Promoters and enhancers for MIR1825 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I032235 Enhancer 1 ENCODE dbSUPER 550.8 -1.9 -1893 1.4 ELF3 FOXA2 ARID4B THRB ZNF48 RAD21 RARA SLC30A9 CREM MIXL1 PIR48609 PIR35343 MIR1825 POFUT1
GH20I032237 Enhancer 0.5 dbSUPER 550.8 -0.2 -169 0.6 ZNF664 POLR2A ZNF623 SUPT5H PIR35343 MIR1825 POFUT1
GH20I032236 Enhancer 0.4 dbSUPER 550.8 -0.9 -856 0.6 ZNF664 POLR2A ZIC2 PIR48609 MIR1825 PIR35343 POFUT1
GH20I032179 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 11.5 -49.6 -49577 17 HDGF FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 SLC30A9 ZNF121 TM9SF4 TSPY26P MIR1825 ENSG00000236772 MYLK2 POFUT1 NOL4L GC20P032195 GC20P032176 PLAGL2
GH20I032283 Enhancer 1.3 Ensembl ENCODE 11.4 +49.6 49619 7.7 PKNOX1 SMAD1 FOXA2 MLX ARNT ARID4B DMAP1 YY1 SLC30A9 ZNF766 BAK1P1 MIR1825 ASXL1 PLAGL2 POFUT1 ENSG00000236772 TM9SF4 NOL4L TSPY26P HCK
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR1825 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR1825 Gene

Genomic Locations for MIR1825 Gene
chr20:32,237,795-32,237,847
(GRCh38/hg38)
Size:
53 bases
Orientation:
Plus strand
chr20:30,825,598-30,825,650
(GRCh37/hg19)

Genomic View for MIR1825 Gene

Genes around MIR1825 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR1825 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1825 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1825 Gene

Proteins for MIR1825 Gene

Post-translational modifications for MIR1825 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR1825 Gene

Domains & Families for MIR1825 Gene

Gene Families for MIR1825 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR1825: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1825 Gene

Function for MIR1825 Gene

Gene Ontology (GO) - Molecular Function for MIR1825 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with MIR1825: view

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1825 Gene

Localization for MIR1825 Gene

Gene Ontology (GO) - Cellular Components for MIR1825 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with MIR1825: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for MIR1825 Gene

Pathways & Interactions for MIR1825 Gene

genes like me logo Genes that share pathways with MIR1825: view

Interacting Proteins for MIR1825 Gene

Gene Ontology (GO) - Biological Process for MIR1825 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with MIR1825: view

No data available for SIGNOR curated interactions for MIR1825 Gene

Drugs & Compounds for MIR1825 Gene

No Compound Related Data Available

Transcripts for MIR1825 Gene

mRNA/cDNA for MIR1825 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1825 Gene

No ASD Table

Relevant External Links for MIR1825 Gene

GeneLoc Exon Structure for
MIR1825
ECgene alternative splicing isoforms for
MIR1825

Expression for MIR1825 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR1825 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR1825 Gene:

MIR1825
genes like me logo Genes that share expression patterns with MIR1825: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR1825 Gene

Orthologs for MIR1825 Gene

Evolution for MIR1825 Gene

ENSEMBL:
Gene Tree for MIR1825 (if available)
TreeFam:
Gene Tree for MIR1825 (if available)

No data available for Orthologs for MIR1825 Gene

Paralogs for MIR1825 Gene

No data available for Paralogs for MIR1825 Gene

Variants for MIR1825 Gene

Sequence variations from dbSNP and Humsavar for MIR1825 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1001344182 -- 32,236,170(+) A/G upstream_transcript_variant
rs1001782811 -- 32,236,582(+) G/A upstream_transcript_variant
rs1001795140 -- 32,236,344(+) T/A upstream_transcript_variant
rs1001980108 -- 32,236,217(+) C/A upstream_transcript_variant
rs1003733815 -- 32,237,633(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR1825 Gene

Variant ID Type Subtype PubMed ID
nsv833954 CNV loss 17160897

Additional Variant Information for MIR1825 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR1825

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR1825 Gene

Disorders for MIR1825 Gene

Additional Disease Information for MIR1825

No disorders were found for MIR1825 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1825 Gene

Publications for MIR1825 Gene

  1. A novel serum microRNA-based identification and classification biomarker of human glioma. (PMID: 28475008) Xing W … Zeng C (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2017) 3 58
  2. Discovering microRNAs from deep sequencing data using miRDeep. (PMID: 18392026) Friedländer MR … Rajewsky N (Nature biotechnology 2008) 3 58
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR1825 Gene

Sources for MIR1825 Gene

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