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Aliases for MIR181C Gene

Subcategory (RNA class) for MIR181C Gene

undefined

Quality Score for this RNA gene is

3

Aliases for MIR181C Gene

  • MicroRNA 181c 2 3
  • MIRN181C 3 6
  • Hsa-Mir-181c 3
  • Mir-181c 3

External Ids for MIR181C Gene

ORGUL Members for MIR181C Gene

Previous HGNC Symbols for MIR181C Gene

  • MIRN181C

Previous GeneCards Identifiers for MIR181C Gene

  • GC19P013855
  • GC19P013985

Summaries for MIR181C Gene

Entrez Gene Summary for MIR181C Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR181C Gene

MIR181C (MicroRNA 181c) is an RNA Gene, and is affiliated with the undefined RNA class. Among its related pathways are MicroRNAs in cancer.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR181C Gene

Genomics for MIR181C Gene

Genomic Location for MIR181C Gene

Start:
13,874,699 bp from pter
End:
13,874,808 bp from pter
Size:
110 bases
Orientation:
Plus strand

Genomic View for MIR181C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR181C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR181C Gene

No data available for Regulatory Elements for MIR181C Gene

Proteins for MIR181C Gene

Post-translational modifications for MIR181C Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR181C Gene

Domains for MIR181C Gene

Gene Families for MIR181C Gene

HGNC:
  • MIR :ncRNAs / Micro RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR181C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR181C Gene

Function for MIR181C Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR181C Gene

Localization for MIR181C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR181C Gene

Pathways for MIR181C Gene

SuperPathways for MIR181C Gene

Superpath Contained pathways
1 MicroRNAs in cancer
genes like me logo Genes that share pathways with MIR181C: view

Pathways by source for MIR181C Gene

1 KEGG pathway for MIR181C Gene

Interacting Proteins for MIR181C Gene

Gene Ontology (GO) - Biological Process for MIR181C Gene

None

Transcripts for MIR181C Gene

mRNA/cDNA for MIR181C Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MIR181C

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR181C Gene

No ASD Table

Relevant External Links for MIR181C Gene

GeneLoc Exon Structure for
MIR181C
ECgene alternative splicing isoforms for
MIR181C

Expression for MIR181C Gene

mRNA expression in normal human tissues for MIR181C Gene

mRNA differential expression in normal tissues according to GTEx for MIR181C Gene

This gene is overexpressed in Testis (37.3), Brain - Frontal Cortex (BA9) (4.2), and Brain - Cortex (4.1).
genes like me logo Genes that share expressions with MIR181C: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for MIR181C Gene

Orthologs for MIR181C Gene

This gene was present in the common ancestor of chordates.

Orthologs for MIR181C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-181c 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia bta-mir-181c 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia cfa-mir-181c 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mir181c 36
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia mdo-mir-181a-3 36
  • 90 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia aca-mir-181a-3 36
  • 80 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii BX649502.1 36
  • 65 (a)
OneToOne
Species with no ortholog for MIR181C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MIR181C Gene

ENSEMBL:
Gene Tree for MIR181C (if available)
TreeFam:
Gene Tree for MIR181C (if available)

Paralogs for MIR181C Gene

No data available for Paralogs for MIR181C Gene

Variants for MIR181C Gene

Sequence variations from dbSNP and Humsavar for MIR181C Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs150286923 -- 13,872,750(+) CCCCC(C/G)ACTCC upstream-variant-2KB
rs373928819 -- 13,872,790(+) TGGCG(G/T)ATGAG upstream-variant-2KB
rs551351392 -- 13,872,716(+) GTGGA(A/G)GTGGC upstream-variant-2KB
rs566766038 -- 13,872,741(+) CGATC(A/G)GGCCC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR181C Gene

Variant ID Type Subtype PubMed ID
nsv833757 CNV Loss 17160897
nsv911097 CNV Loss 21882294
nsv911098 CNV Loss 21882294
dgv3738n71 CNV Loss 21882294
nsv911102 CNV Loss 21882294
dgv3739n71 CNV Loss 21882294
nsv833760 CNV Loss 17160897

Relevant External Links for MIR181C Gene

HapMap Linkage Disequilibrium report
MIR181C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MIR181C Gene

Disorders for MIR181C Gene

No disorders were found for MIR181C Gene.

No data available for UniProtKB/Swiss-Prot for MIR181C Gene

Publications for MIR181C Gene

  1. Vertebrate microRNA genes. (PMID: 12624257) Lim L.P. … Bartel D.P. (Science 2003) 3
  2. Extensive modulation of a set of microRNAs in primary glioblastoma. (PMID: 16039986) CiafrA" S.A. … Farace M.G. (Biochem. Biophys. Res. Commun. 2005) 3
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  4. A mammalian microRNA expression atlas based on small RNA library sequencing. (PMID: 17604727) Landgraf P. … Tuschl T. (Cell 2007) 3
  5. Involvement of epigenetically silenced microRNA-181c in gastric carcinogenesis. (PMID: 20080834) Hashimoto Y. … Yuasa Y. (Carcinogenesis 2010) 3

Products for MIR181C Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate MIR181C
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for MIR181C
    • Block miRNA regulation of MIR181C using miScript Target Protectors

    Sources for MIR181C Gene

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