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Aliases for MIR17HG Gene

Subcategory (RNA class) for MIR17HG Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for MIR17HG Gene

  • MiR-17-92 Cluster Host Gene 2 3
  • C13orf25 3 4 6
  • MIRHG1 3 4 6
  • MIRH1 3 4 6
  • MiR-17-92 Cluster Host Gene (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 48 2 3
  • MicroRNA Host Gene 1 (Non-Protein Coding) 2 3
  • MIR17 Host Gene (Non-Protein Coding) 2 3
  • FGLDS2 3 6
  • MIHG1 3 6
  • MicroRNA Host Gene (Non-Protein Coding) 1 3
  • Putative MicroRNA Host Gene 1 Protein 4
  • Chromosome 13 Open Reading Frame 25 2
  • Mir-17-92 MicroRNA Cluster 3
  • Non-Protein Coding RNA 48 2
  • NCRNA00048 3
  • LINC00048 3
  • MiR-17-92 3

External Ids for MIR17HG Gene

ORGUL Members for MIR17HG Gene

Previous HGNC Symbols for MIR17HG Gene

  • C13orf25
  • MIRHG1

Previous GeneCards Identifiers for MIR17HG Gene

  • GC13P090885
  • GC13P092000
  • GC13P072595

Summaries for MIR17HG Gene

Entrez Gene Summary for MIR17HG Gene

  • This gene is the host gene for the MIR17-92 cluster, a group of at least six microRNAs (miRNAs) that may be involved in cell survival, proliferation, differentiation, and angiogenesis. Amplification of this gene has been found in several lymphomas and solid tumors. Two non-protein coding transcript variants have been found for this host gene, but only the longest is a polycistronic transcript containing the MIR17-92 cluster. [provided by RefSeq, May 2012]

GeneCards Summary for MIR17HG Gene

MIR17HG (MiR-17-92 Cluster Host Gene) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MIR17HG include feingold syndrome 2 and feingold syndrome.

Gene Wiki entry for MIR17HG Gene

fRNAdb sequence ontologies for MIR17HG Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • mature_transcript: A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary and piRNA Summary for MIR17HG Gene

Genomics for MIR17HG Gene

Genomic Location for MIR17HG Gene

Start:
91,347,820 bp from pter
End:
91,354,579 bp from pter
Size:
6,760 bases
Orientation:
Plus strand

Genomic View for MIR17HG Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR17HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR17HG Gene

No data available for Regulatory Elements for MIR17HG Gene

Proteins for MIR17HG Gene

  • Protein details for MIR17HG Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q75NE6-MIRH1_HUMAN
    Recommended name:
    Putative microRNA 17 host gene protein
    Protein Accession:
    Q75NE6
    Secondary Accessions:
    • A4QMU7
    • Q75NE7

    Protein attributes for MIR17HG Gene

    Size:
    70 amino acids
    Molecular mass:
    8163 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • The microRNAs that are encoded in a MIR17HG intron stimulate growth of cultured lung cancer cells

    Alternative splice isoforms for MIR17HG Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MIR17HG Gene

Proteomics data for MIR17HG Gene at MOPED

Post-translational modifications for MIR17HG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR17HG Gene

Domains for MIR17HG Gene

Protein Domains for MIR17HG Gene

ProtoNet:

Suggested Antigen Peptide Sequences for MIR17HG Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR17HG: view

No data available for Gene Families and UniProtKB/Swiss-Prot for MIR17HG Gene

Function for MIR17HG Gene

Phenotypes for MIR17HG Gene

genes like me logo Genes that share phenotypes with MIR17HG: view

miRNA for MIR17HG Gene

miRTarBase miRNAs that target MIR17HG

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for MIR17HG Gene

Localization for MIR17HG Gene

Subcellular locations from UniProtKB/Swiss-Prot for MIR17HG Gene

Membrane; Single-pass membrane protein.

No data available for Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR17HG Gene

Pathways for MIR17HG Gene

SuperPathways for MIR17HG Gene

No Data Available

Interacting Proteins for MIR17HG Gene

Gene Ontology (GO) - Biological Process for MIR17HG Gene

None

No data available for Pathways by source for MIR17HG Gene

Transcripts for MIR17HG Gene

mRNA/cDNA for MIR17HG Gene

(3) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MIR17HG

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR17HG Gene

No ASD Table

Relevant External Links for MIR17HG Gene

GeneLoc Exon Structure for
MIR17HG
ECgene alternative splicing isoforms for
MIR17HG

Expression for MIR17HG Gene

mRNA expression in normal human tissues for MIR17HG Gene

SOURCE GeneReport for Unigene cluster for MIR17HG Gene Hs.24115

mRNA Expression by UniProt/SwissProt for MIR17HG Gene

Q75NE6-MIRH1_HUMAN
Tissue specificity: Highly expressed in B-cell lymphoma and lung cancer
genes like me logo Genes that share expressions with MIR17HG: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Protein expression for MIR17HG Gene

Orthologs for MIR17HG Gene

Evolution for MIR17HG Gene

ENSEMBL:
Gene Tree for MIR17HG (if available)
TreeFam:
Gene Tree for MIR17HG (if available)

No data available for Orthologs for MIR17HG Gene

Paralogs for MIR17HG Gene

No data available for Paralogs for MIR17HG Gene

Variants for MIR17HG Gene

Sequence variations from dbSNP and Humsavar for MIR17HG Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type MAF
rs1428 -- 91,354,516(-) AAAAT(A/G/T)CAGTA nc-transcript-variant
rs1046057 -- 91,354,383(+) AAGTT(G/T)AAGAA nc-transcript-variant
rs1888138 -- 91,347,242(-) AGGTA(A/T)TTAGG upstream-variant-2KB
rs2351704 -- 91,347,462(+) GAGGC(A/T)GCCGG upstream-variant-2KB
rs7318578 -- 91,353,215(+) AAAAA(A/C)TGGAA intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for MIR17HG Gene

Variant ID Type Subtype PubMed ID
nsv832679 CNV Gain 17160897
esv28603 CNV Loss 19812545

Relevant External Links for MIR17HG Gene

HapMap Linkage Disequilibrium report
MIR17HG
Human Gene Mutation Database (HGMD)
MIR17HG

PCR Panel Products

  • Copy Number PCR Panels: for MIR17HG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MIR17HG Gene

Disorders for MIR17HG Gene

MalaCards: The human disease database

MalaCards: The human disease database. (3) Diseases for MIR17HG Gene including...

Search for MIR17HG Gene in MalaCards »

(1) OMIM Diseases for MIR17HG Gene (609415)

UniProtKB/Swiss-Prot

MIRH1_HUMAN
  • Feingold syndrome 2 (FGLDS2) [MIM:614326]: A syndrome characterized by microcephaly, short stature, and digital abnormalities including brachydactyly, brachymesophalangy of the second and fifth fingers, hypoplastic thumbs of variable severity, and cutaneous syndactyly of the toes. {ECO:0000269 PubMed:21892160}. Note=The disease is caused by mutations affecting the gene represented in this entry. Microdeletions encompassing the MIR17HG locus can be responsible of FGLDS2.

Relevant External Links for MIR17HG

Genetic Association Database (GAD)
MIR17HG
genes like me logo Genes that share disorders with MIR17HG: view

Publications for MIR17HG Gene

  1. A polycistronic microRNA cluster, miR-17-92, is overexpressed in human lung cancers and enhances cell proliferation. (PMID: 16266980) Hayashita Y. … Takahashi T. (Cancer Res. 2005) 2 3 4 23
  2. Identification and characterization of a novel gene, C13orf25, as a target for 13q31-q32 amplification in malignant lymphoma. (PMID: 15126345) Ota A. … Seto M. (Cancer Res. 2004) 2 3 4
  3. A microRNA polycistron as a potential human oncogene. (PMID: 15944707) He L. … Hammond S.M. (Nature 2005) 2 3
  4. Role for amplification and expression of glypican-5 in rhabdomyosarcoma. (PMID: 17210683) Williamson D. … Shipley J. (Cancer Res. 2007) 2 3
  5. Germline deletion of the miR-17 approximately 92 cluster causes skeletal and growth defects in humans. (PMID: 21892160) de Pontual L. … Amiel J. (Nat. Genet. 2011) 3 4

Products for MIR17HG Gene

  • Copy Number PCR Panels: for MIR17HG
  • QIAGEN qRT-PCR Assays for microRNAs that regulate MIR17HG
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for MIR17HG
    • Block miRNA regulation of MIR17HG using miScript Target Protectors

    Sources for MIR17HG Gene

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