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MIR17HG Gene

RNA gene   GIFtS: 34
GCID: GC13P092000

MiR-17-92 Cluster Host Gene (Non-Protein Coding)

(Previous names: chromosome 13 open reading frame 25, microRNA host gene...)
(Previous symbols: C13orf25, MIRHG1)
  See MIR17HG-related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Subcategory (RNA class): lncRNA

Quality score for this RNA gene is 10.4

Aliases
MiR-17-92 Cluster Host Gene (Non-Protein Coding)1 2     MicroRNA Host Gene 1 (Non-Protein Coding)1
C13orf251 2 3 5     MIR17 Host Gene (Non-Protein Coding)1
MIRHG11 2 3 5     Non-Protein Coding RNA 481
MIRH12 3 5     LINC000482
FGLDS22 5     NCRNA000482
MIHG12 5     miR-17-922
Chromosome 13 Open Reading Frame 251     Putative MicroRNA Host Gene 1 Protein3
Long Intergenic Non-Protein Coding RNA 481     

External Ids:    HGNC: 235641   Entrez Gene: 4079752   Ensembl: ENSG000002154177   OMIM: 6094155   UniProtKB: Q75NE63   
ORGUL members:    fRNAdb10:FR279683 FR360184 FR077146 FR262815 FR129211      
H-InvDB12: HIT000422028 HIT000484801 HIT000422027 HIT000422035 see all 8    
NCBI13:AB176708    
NONCODE14:n345746 n386735 n377774 n345232    
RNAdb15:EVF36612 EVF36611 RNZ10480 RNZ10479 LIT3364 see all 9    

Export aliases for MIR17HG gene to outside databases

Previous GC identifers: GC13P090885 GC13P072595


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MIR17HG Gene:
This gene is the host gene for the MIR17-92 cluster, a group of at least six microRNAs (miRNAs) that may be
involved in cell survival, proliferation, differentiation, and angiogenesis. Amplification of this gene has been
found in several lymphomas and solid tumors. Two non-protein coding transcript variants have been found for this
host gene, but only the longest is a polycistronic transcript containing the MIR17-92 cluster. (provided by
RefSeq, May 2012)

GeneCards Summary for MIR17HG Gene:
MIR17HG (miR-17-92 cluster host gene (non-protein coding)) is an RNA gene, and is affiliated with the lncRNA class. Diseases associated with MIR17HG include feingold syndrome 2, and feingold syndrome.

Gene Wiki entry for MIR17HG (MIRH1) Gene

fRNAdb sequence ontologies for MIR17HG - the ORGUL cluster for this gene includes several descriptions:
nc_conserved_region - Non-coding region of sequence similarity by descent from a common ancestor.
mature_transcript - A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

View fRNAdb secondary structures for MIR17HG

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000013.10  NC_018924.2  NT_009952.15  
Regulatory elements:
   Search for regulatory transcription factor binding sites for MIR17HG
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MIR17HG


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 13q31.3   Ensembl cytogenetic band:  13q31.3   HGNC cytogenetic band: 13q31.3

MIR17HG Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIR17HG gene location

GeneLoc information about chromosome 13         GeneLoc Exon Structure

GeneLoc location for GC13P092000:  view genomic region     (about GC identifiers)

Start:
92,000,074 bp from pter      End:
92,006,833 bp from pter
Size:
6,760 bases      Orientation:
plus strand
ORGUL member locations:
Legend (see complete legend)

ORGUL Member Locations for MIR17HG

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
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UniProtKB/Swiss-Prot: MIRH1_HUMAN, Q75NE6 (See protein sequence)
Recommended Name: Putative microRNA 17 host gene protein  
Size: 70 amino acids; 8163 Da
Miscellaneous: The microRNAs that are encoded in a MIR17HG intron stimulate growth of cultured lung cancer cells
Caution: Product of a dubious CDS prediction. The MIR17HG transcript shows predominant nuclear localization and
may not be efficiently translated into protein
Secondary accessions: A4QMU7 Q75NE7
Alternative splicing: 2 isoforms:  Q75NE6-1   Q75NE6-2   

Explore the universe of human proteins at neXtProt for MIR17HG: NX_Q75NE6


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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
LNCRNA: Long non-coding RNAs

ProtoNet protein and cluster: Q75NE6


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Phenotypes:
     2 GenomeRNAi human phenotypes for MIR17HG:
 Decreased Hepatitis C virus re  Decreased POU5F1-GFP protein e 

Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
MIRH1_HUMAN, Q75NE6: Membrane; Single-pass membrane protein (Potential)

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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Interactions:

    Search GeneGlobe Interaction Network for MIR17HG

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for MIR17HG (MIRH1)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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5/7 fRNAdb Secondary structures (see all 7):


Unigene Clusters for MIR17HG:

MiR-17-92 cluster host gene (non-protein coding)
Hs.24115  [show with all ESTs], Hs.652877
Unigene Representative Sequences: AB176708, AF339828
9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000582141(processed_transcript) ENST00000400282(processed_transcript) ENST00000581816(processed_transcript) ENST00000385012(processed_transcript) ENST00000362310(processed_transcript)
ENST00000384878(processed_transcript) ENST00000362279(processed_transcript) ENST00000384829(processed_transcript) ENST00000385233(processed_transcript)
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Additional mRNA sequence: AF339828.1 

5 DOTS entries:

DT.102822785  DT.208646  DT.208647  DT.95220382  DT.40253000 

3 AceView cDNA sequences:

AF339828 AA165607 AA165617 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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Expression evidence for MIR17HG:RNAdb

MIR17HG expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: AATTTTAAGA
MIR17HG Expression
About this image

MIR17HG Protein expression data from MOPED1, PaxDb2 and MaxQB3 --

SOURCE GeneReport for Unigene clusters: Hs.24115 Hs.652877

UniProtKB/Swiss-Prot: MIRH1_HUMAN, Q75NE6
Tissue specificity: Highly expressed in B-cell lymphoma and lung cancer

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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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ENSEMBL Gene Tree for MIR17HG (if available)
TreeFam Gene Tree for MIR17HG (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MIR17HG (see all 103)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 13 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1910345111,2
--72919349(+) CTTCAA/GATTCA 2 -- us2k10--------
rs79889361,2
A--72919382(+) TTATTC/GTAATT 2 -- us2k10--------
rs79936691,2
A,H--72919603(+) TTCCAC/TAGAAA 2 -- us2k14Minor allele frequency- T:0.00NS EA 418
rs79936811,2
A,H--72919621(+) AGATAC/TCTAAA 2 -- us2k14Minor allele frequency- T:0.00NS EA 420
rs1458697661,2
--72919626(+) CCTAAA/CAACAG 2 -- us2k10--------
rs1489947211,2
C--72919631(+) AAACAA/GCTTTT 2 -- us2k10--------
rs1833455981,2
--72919698(+) AACTCC/TTGCTA 2 -- us2k10--------
rs1385146391,2
C--72919718(+) ATATA-/GGGTGG 2 -- us2k10--------
rs1871377311,2
--72919732(+) TTCCCA/GTGATT 2 -- us2k10--------
rs1920382171,2
--72919754(+) ATGAAC/TAATCT 2 -- us2k10--------

HapMap Linkage Disequilibrium report for MIR17HG (92000074 - 92006833 bp)

Structural Variations
     Database of Genomic Variants (DGV) 2 variations for MIR17HG:    About this table    
Variant IDTypeSubtypePubMed ID
esv28603CNV Loss19812545
nsv832679CNV Gain17160897

Human Gene Mutation Database (HGMD): MIR17HG
Site Specific Mutation Identification with PCR Assays
1 Copy Number PCR Panel containing MIR17HG:
WNT Signaling
SeqTarget long-range PCR primers for resequencing MIR17HG
DNA2.0 Custom Variant and Variant Library Synthesis for MIR17HG

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 609415OMIM information: 300037    
OMIM disorders: 614326  
UniProtKB/Swiss-Prot: MIRH1_HUMAN, Q75NE6
  • Feingold syndrome 2 (FGLDS2) [MIM:614326]: A syndrome characterized by microcephaly, short stature, and
    digital abnormalities including brachydactyly, brachymesophalangy of the second and fifth fingers, hypoplastic
    thumbs of variable severity, and cutaneous syndactyly of the toes. Note=The disease is caused by mutations
    affecting the gene represented in this entry. Microdeletions encompassing the MIR17HG locus can be responsible of
    FGLDS2

  • 3 diseases for MIR17HG:    
    About MalaCards
    feingold syndrome 2    feingold syndrome    mantle cell lymphoma


    Find genes that share disorders with MIR17HG           About GenesLikeMe

    Genetic Association Database (GAD): MIR17HG

    Export disorders for MIR17HG gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for MIR17HG gene, integrated from 10 sources (see all 49):
    (articles sorted by number of sources associating them with MIR17HG)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A polycistronic microRNA cluster, miR-17-92, is overexpressed in human lung cancers and enhances cell proliferation. (PubMed id 16266980)1, 2, 3, 9 Hayashita Y.... Takahashi T. (Cancer Res. 2005)
    2. Identification and characterization of a novel gene, C13orf25, as a target for 13q31-q32 amplification in malignant lymphoma. (PubMed id 15126345)1, 2, 3 Ota A.... Seto M. (Cancer Res. 2004)
    3. Role of microRNA in the pathogenesis of malignant lymphoma. (PubMed id 23551855)1, 3 Tagawa H....Sawada K. (Cancer Sci. 2013)
    4. Germline deletion of the miR-17 approximately 92 cluster causes skeletal and growth defects in humans. (PubMed id 21892160)1, 2 de Pontual L.... Amiel J. (Nat. Genet. 2011)
    5. Role for amplification and expression of glypican-5 in rhabdomyosarcoma. (PubMed id 17210683)1, 3 Williamson D....Shipley J. (Cancer Res. 2007)
    6. A microRNA polycistron as a potential human oncogene. (PubMed id 15944707)1, 3 He L....Hammond S.M. (Nature 2005)
    7. MicroRNA-17~92 plays a causative role in lymphomagenesis by coordinating multiple oncogenic pathways. (PubMed id 23921550)1 Jin H.Y....Xiao C. (EMBO J. 2013)
    8. mir-17-92: a polycistronic oncomir with pleiotropic functions. (PubMed id 23550645)1 Olive V....He L. (Immunol. Rev. 2013)
    9. microRNA-17-92 regulates IL-10 production by regulatory T cells and control of experimental autoimmune encephalomyelitis. (PubMed id 23858035)1 de Kouchkovsky D....Jeker L.T. (J. Immunol. 2013)
    10. The Myc-miR-17-92 axis amplifies B-cell receptor signaling via inhibition of ITIM proteins: a novel lymphomagenic feed-forward loop. (PubMed id 24169826)1 Psathas J.N....Thomas-Tikhonenko A. (Blood 2013)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 407975 HGNC: 23564 AceView: C13orf25.1 Ensembl:ENSG00000215417 euGenes: HUgn407975
    ECgene: MIR17HG H-InvDB: MIR17HG

    (According to HUGE)
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    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for MIR17HG Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for MIR17HG gene:
    Search GeneIP for patents involving MIR17HG

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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