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MIR150 Gene

RNA gene   GIFtS: 23
GCID: GC19M050004

MicroRNA 150


(Previous symbol: MIRN150)
  See MIR150-related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Subcategory (RNA class): miRNA

Quality score for this RNA gene is 8.2

Aliases
MicroRNA 1501 2
MIRN1501 2 5
miRNA1502
mir-1509

External Ids:    HGNC: 315371   Entrez Gene: 4069422   Ensembl: ENSG000002077827   OMIM: 6111145   
ORGUL members:    fRNAdb10:FR164480 FR103694 FR194650 FR164480 FR103694      
miRBase:MIMAT0000160 MIMAT0000853 MIMAT0000451 MI0000479 MIMAT0004610    
RNAdb15:EVF46631    

Export aliases for MIR150 gene to outside databases

Previous GC identifer: GC19M054698


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MIR150 Gene:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of
gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are
transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can
be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme
to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the
cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The
mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through
imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of
the target mRNA. The RefSeq represents the predicted microRNA stem-loop. (provided by RefSeq, Sep 2009)

GeneCards Summary for MIR150 Gene:
MIR150 (microRNA 150) is an RNA gene, and is affiliated with the miRNA class. Diseases associated with MIR150 include yaws, and chronic myeloid leukemia.



fRNAdb sequence ontologies for MIR150 - the ORGUL cluster for this gene includes several descriptions:
miRNA - Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors.
pre_miRNA - The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.
nc_conserved_region - Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for MIR150

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for MIR150
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for MIR150

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MIR150


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.33   Ensembl cytogenetic band:  19q13.33   HGNC cytogenetic band: 19q13.33

MIR150 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIR150 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M050004:  view genomic region (via miRBase)     (about GC identifiers)

Start:
50,004,042 bp from pter      End:
50,004,125 bp from pter
Size:
84 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
MIR: ncRNAs / Micro RNAs

  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for MIR150 About    
See pathways by source

SuperPathContained pathways About
1MicroRNAs in cancer
MicroRNAs in cancer


Find genes that share SuperPaths with MIR150           About GenesLikeMe

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways



1 Kegg Pathway  (Kegg details for MIR150):
    MicroRNAs in cancer

    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MIR150
Interactions:

    Search GeneGlobe Interaction Network for MIR150

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for MIR150



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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2 fRNAdb Secondary structures:


1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000385048(miRNA)
miRNA
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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Expression evidence for MIR150:miRBase

See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --

MIR150 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
    Custom PCR Arrays for MIR150
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In Situ
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MIR150

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for MIR150 gene from Selected species (see all 8)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
lizard
(Anolis carolinensis)
Reptilia aca-mir-1506
aca-mir-150
72(a)
1 ↔ 1
6(80358836-80358892)
zebrafish
(Danio rerio)
Actinopterygii dre-mir-1506
dre-mir-150
66(a)
1 ↔ 1
3(32708285-32708363)
        Species with no ortholog for MIR150

ENSEMBL Gene Tree for MIR150 (if available)
TreeFam Gene Tree for MIR150 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MIR150 (see all 57)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 19 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1493584651,2
--50003564(+) TCCTCC/TGCGCC 1 -- ds50010--------
rs1448374711,2
--50003570(+) GCGCCA/CGCTGC 1 -- ds50010--------
rs1402340331,2
--50003655(+) TACCGC/GGGCCC 1 -- ds50010--------
rs1163545491,2
C,F--50003701(+) GAGACG/TGCCCA 1 -- ds50012Minor allele frequency- T:0.05WA NS 268
rs29146701,2
C,H--50003708(+) CCCAAC/TACACA 1 -- ds500117Minor allele frequency- T:0.00NS EA NA WA CSA 792
rs1832534771,2
--50003719(+) CAGGCC/TGCAGA 1 -- ds50010--------
rs133467081,2
C,F,H--50003739(+) CTTGAG/AAGGAA 1 -- ds50014Minor allele frequency- A:0.00NS EA 414
rs2000193601,2
--50003814(+) GAGAG-/CACACAG 1 -- ds50010--------
rs1380521931,2
C--50003817(+) AGCAC-/AGCAGAC 1 -- ds50010--------
rs723722381,2
C--50003818(+) GCACA-/AGGACCA 1 -- ds50010--------

HapMap Linkage Disequilibrium report for MIR150 (50004042 - 50004125 bp)

Structural Variations
     Database of Genomic Variants (DGV) 7 variations for MIR150:    About this table    
Variant IDTypeSubtypePubMed ID
nsv833862CNV Loss17160897
nsv912262CNV Loss21882294
nsv912264CNV Loss21882294
nsv833863CNV Loss17160897
nsv912261CNV Loss21882294
nsv912265CNV Loss21882294
nsv9739CNV Gain+Loss18304495

Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing MIR150
DNA2.0 Custom Variant and Variant Library Synthesis for MIR150

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 611114    OMIM disorders: --

4 diseases for MIR150:    
About MalaCards
yaws    chronic myeloid leukemia    non-small cell lung carcinoma    esophageal squamous cell carcinoma


Find genes that share disorders with MIR150           About GenesLikeMe


Export disorders for MIR150 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MIR150 gene, integrated from 10 sources (see all 41):
(articles sorted by number of sources associating them with MIR150)
    Utopia: connect your pdf to the dynamic
world of online information

  1. miR-150, p53 protein and relevant miRNAs consist of a regulatory network in NSCLC tumorigenesis. (PubMed id 23670238)1 Wang D.T....Jin Y.X. (Oncol. Rep. 2013)
  2. MiR-150 is associated with poor prognosis in esophageal squamous cell carcinoma via targeting the EMT inducer ZEB1. (PubMed id 23013135)1 Yokobori T....Kuwano H. (Cancer Sci. 2013)
  3. Reduced microRNA-150 is associated with poor survival in pulmonary arterial hypertension. (PubMed id 23220912)1 Rhodes C.J....Wilkins M.R. (Am. J. Respir. Crit. Care Med. 2013)
  4. Adenosine stimulates the migration of human endothelial progenitor cells. Role of CXCR4 and microRNA-150. (PubMed id 23326587)1 Rolland-Turner M....Wagner D. (PLoS ONE 2013)
  5. Circulating microRNA-150 serum levels predict survival in patients with critical illness and sepsis. (PubMed id 23372743)1 Roderburg C....Luedde T. (PLoS ONE 2013)
  6. Re-expression of microRNA-150 induces EBV-positive Burkitt lymphoma differentiation by modulating c-Myb in vitro. (PubMed id 23521217)1 Chen S....Zhao T. (Cancer Sci. 2013)
  7. MicroRNA-150: a novel marker of left ventricular remodeling after acute myocardial infarction. (PubMed id 23547171)1 Devaux Y....Squire I.B. (Circ Cardiovasc Genet 2013)
  8. miR-150 promotes the proliferation of lung cancer cells by targeting P53. (PubMed id 23747308)1 Zhang N....Xu L. (FEBS Lett. 2013)
  9. miR-146a and miR-150 promote the differentiation of CD133+ cells into T-lymphoid lineage. (PubMed id 23673476)1 Fallah P....Soleimani M. (Mol. Biol. Rep. 2013)
  10. Expression of miR-150 and miR-3940-5p is reduced in non-small cell lung carcinoma and correlates with clinicopathological features. (PubMed id 23228962)1 Sun Y....Gao W. (Oncol. Rep. 2013)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 406942 HGNC: 31537 Ensembl:ENSG00000207782 miRBase: hsa-mir-150 euGenes: HUgn406942
ECgene: MIR150 Kegg: 406942 H-InvDB: MIR150

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MIR150 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MIR150 gene:
Search GeneIP for patents involving MIR150

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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