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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

MIR146A Gene

RNA gene   GIFtS: 27
GCID: GC05P159896

MicroRNA 146a

(Previous name: microRNA 146)
(Previous symbols: MIRN146, MIRN146A)
Microbiology & Infectious Diseases Congress
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Subcategory (RNA class): lncRNA

Quality score for this RNA gene is 3.2

Aliases
MicroRNA 146a1 2     miR-146a2
MIRN146A1 2 5     miRNA146A2
MIRN1461 2     mir-146a9
MicroRNA 1461     

External Ids:    HGNC: 315331   Entrez Gene: 4069382   Ensembl: ENSG000002535227   OMIM: 6105665   
ORGUL members:    fRNAdb10:FR010418      
NONCODE14:n340716 n384765 n345926      
RNAdb15:EVF46969    

Export aliases for MIR146A gene to outside databases

Previous GC identifers: GC05P159848 GC05P159912


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for MIR146A Gene:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of
gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are
transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can
be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme
to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the
cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The
mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through
imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of
the target mRNA. The RefSeq represents the predicted microRNA stem-loop. (provided by RefSeq, Sep 2009)

GeneCards Summary for MIR146A Gene: 
MIR146A (microRNA 146a) is an RNA gene, and is affiliated with the lncRNA class. Diseases associated with MIR146A include noma, and sporadic breast cancer.

Gene Wiki entry for MIR146A Gene

fRNAdb sequence ontology for MIR146A:
nc_conserved_region - Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for MIR146A

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for MIR146A
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for MIR146A

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MIR146A


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q34   Ensembl cytogenetic band:  5q33.3   HGNC cytogenetic band: 5q34

MIR146A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIR146A gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05P159896:  view genomic region (via miRBase)     (about GC identifiers)

Start:
159,895,275 bp from pter      End:
159,914,433 bp from pter
Size:
19,159 bases      Orientation:
plus strand
ORGUL member locations:
Legend (see complete legend)

ORGUL Member Locations for MIR146A

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
HGNC Gene Families: 
MIR: ncRNAs / Micro RNAs

  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Animal Models:
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miRNA
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section

SuperPaths for MIR146A About                                                                                                See pathways by source

SuperPathContained pathways About
1MicroRNAs in cancer
MicroRNAs in cancer

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways



1         Kegg Pathway  (Kegg details for MIR146A):
    MicroRNAs in cancer


MIR146A for pathways           About GeneDecksing

Interactions:

    SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for MIR146A

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for MIR146A

Search CenterWatch for drugs/clinical trials and news about MIR146A

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section
1 fRNAdb Secondary structure:


2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000517927(lincRNA)(uc003lyl.4) ENST00000385201(lincRNA)(uc021yhe.1)
Congresses - knowledge worth sharing:  
European Congress of Clinical Microbiology and Infectious Diseases (ECCMID) 10 - 13 May 2014

miRNA
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

Expression evidence for MIR146A:none

MIR146A expression in normal human tissues (normalized intensities)      MIR146A embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
MIR146A Expression
About this image


MIR146A expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database 
 5/2 selected tissues (see all 2) fully expand
 
 Umbilical Cord (Extraembryonic Tissues)
         Umbilical cord blood-derived endothelial progenitor cells
 
 Endothelium (Cardiovascular System)
         Umbilical cord blood-derived endothelial progenitor cells
    SABiosciences Custom PCR Arrays for MIR146A
Primer
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MIR146A

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section
  --

ENSEMBL Gene Tree for MIR146A (if available)
TreeFam Gene Tree for MIR146A (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/60 SNPs in MIR146A are shown (see all 60)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 5 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1155266201,2
F--159910391(+) TGAGAA/GATGCA 1 -- us2k11Minor allele frequency- G:0.02NA 120
rs1823479341,2
--159910401(+) AAACAC/TATGTC 1 -- us2k10--------
rs345523221,2
C,F--159910447(+) AGCATC/AAAATA 1 -- us2k14Minor allele frequency- A:0.04NA 126
rs100693001,2
C,F,H--159910471(+) aacaaC/Tccaaa 1 -- us2k110Minor allele frequency- T:0.03NS EA NA CSA WA 634
rs1858435791,2
--159910564(+) GATACA/GCATTA 1 -- us2k10--------
rs1429025571,2
--159910622(+) AGGCCA/GCTGAT 1 -- us2k10--------
rs1475896771,2
--159910649(+) TATAAC/GATGTC 1 -- us2k10--------
rs1420342391,2
C--159910693(+) TTCCCC/TAGGGG 1 -- us2k10--------
rs1909491021,2
--159910734(+) TGGTTA/TTGGGA 1 -- us2k10--------
rs1840432181,2
--159910791(+) TGTACA/TACTCT 1 -- us2k10--------

HapMap Linkage Disequilibrium report for MIR146A (159895275 - 159914433 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for MIR146A: --

Human Gene Mutation Database (HGMD): MIR146A
SABiosciences Cancer Mutation PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing MIR146A
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
OMIM gene information: 610566    OMIM disorders: --

20/55 diseases for MIR146A (see all 55):    About MalaCards
noma    sporadic breast cancer    pneumoconiosis    temporal lobe epilepsy
squamous cell carcinoma of the head and neck    psoriatic arthritis    acute promyelocytic leukemia    n syndrome
familial breast cancer    papillary thyroid carcinoma    esophageal cancer    esophageal squamous cell carcinoma
ulcerative colitis    juvenile rheumatoid arthritis    kaposi's sarcoma    systemic lupus erythematosus
dilated cardiomyopathy    thyroid cancer    oral lichen planus    esophagitis


MIR146A for disorders           About GeneDecksing


Congresses - knowledge worth sharing:  
Alzheimer's & Parkinson's Diseases Congress (ADPD) 18 - 22 March 2015
Genetic Association Database (GAD): MIR146A
Human Genome Epidemiology (HuGE) Navigator: MIR146A (0 documents)

Export disorders for MIR146A gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for MIR146A gene, integrated from 9 sources (see all 164):
(articles sorted by number of sources associating them with MIR146A)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Common genetic variants in pre-microRNAs are associat ed with risk of coal workers' pneumoconiosis. (PubMed id 19881472)1, 4 Wang M....Ni C. (2010)
  2. A functional polymorphism in Pre-miR-146a gene is ass ociated with prostate cancer risk and mature miR-146a expression in vivo. (PubMed id 19902466)1, 4 Xu B....Wu H.F. (2010)
  3. Evaluation of SNPs in miR-146a, miR196a2 and miR-499 as low-penetrance alleles in German and Italian familial breast cancer cases. (PubMed id 19847796)1, 4 Catucci I....Peterlongo P. (2010)
  4. Functional variant in microRNA-196a2 contributes to t he susceptibility of congenital heart disease in a Chinese population. (PubMed id 19514064)1, 4 Xu J....Chen Y. (2009)
  5. Novel genetic variants in microRNA genes and familial breast cancer. (PubMed id 19048628)1, 4 Shen J....Zhao H. (2009)
  6. Genetic variations in microRNA-related genes are novel susceptibility loci for esophageal cancer risk. (PubMed id 19138993)1, 4 Ye Y....Wu X. (2008)
  7. Association between the rs2910164 polymorphism in pre- Mir-146a sequence and thyroid carcinogenesis. (PubMed id 23451063)1 Wei W.J....Wang J.C. (2013)
  8. Differential regulation of microRNA-146a and microRNA- 146b-5p in human retinal pigment epithelial cells by interleukin-1b, tumor necro sis factor-a, and interferon-g. (PubMed id 23592910)1 Kutty R.K....Redmond T.M. (2013)
  9. miR-146a inhibits cell growth, cell migration and indu ces apoptosis in non-small cell lung cancer cells. (PubMed id 23555954)1 Chen G....De Greve J. (2013)
  10. MicroRNA-146a acts as a metastasis suppressor in gastr ic cancer by targeting WASF2. (PubMed id 23435376)1 Yao Q....Zhang S. (2013)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
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(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 406938 HGNC: 31533 Ensembl:ENSG00000253522 miRBase: hsa-mir-146a euGenes: HUgn406938
ECgene: MIR146A Kegg: 406938 H-InvDB: MIR146A

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for MIR146A Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for MIR146A gene:
Search GeneIP for patents involving MIR146A

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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