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Aliases for MIR143HG Gene

Subcategory (RNA class) for MIR143HG Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for MIR143HG Gene

  • MIR143 Host Gene 2 3
  • MIR143 Host Gene (Non-Protein Coding) 2

External Ids for MIR143HG Gene

ORGUL Members for MIR143HG Gene

Summaries for MIR143HG Gene

GeneCards Summary for MIR143HG Gene

MIR143HG (MIR143 Host Gene) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR143HG Gene

Genomics for MIR143HG Gene

Genomic Location for MIR143HG Gene

Start:
149,406,689 bp from pter
End:
149,432,836 bp from pter
Size:
26,148 bases
Orientation:
Plus strand

Genomic View for MIR143HG Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR143HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR143HG Gene

No data available for Regulatory Elements for MIR143HG Gene

Proteins for MIR143HG Gene

Post-translational modifications for MIR143HG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR143HG Gene

Domains for MIR143HG Gene

Gene Families for MIR143HG Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with MIR143HG: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for MIR143HG Gene

Function for MIR143HG Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR143HG Gene

Localization for MIR143HG Gene

No data available for Gene Ontology (GO) - Cellular Components for MIR143HG Gene

Pathways for MIR143HG Gene

SuperPathways for MIR143HG Gene

No Data Available

Interacting Proteins for MIR143HG Gene

Gene Ontology (GO) - Biological Process for MIR143HG Gene

None

No data available for Pathways by source for MIR143HG Gene

Transcripts for MIR143HG Gene

mRNA/cDNA for MIR143HG Gene

(10) Additional mRNA sequences :
(15) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MIR143HG Gene

MIR143 host gene (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MIR143HG Gene

No ASD Table

Relevant External Links for MIR143HG Gene

GeneLoc Exon Structure for
MIR143HG
ECgene alternative splicing isoforms for
MIR143HG

Expression for MIR143HG Gene

mRNA expression in normal human tissues for MIR143HG Gene

mRNA differential expression in normal tissues according to GTEx for MIR143HG Gene

This gene is overexpressed in Esophagus - Gastroesophageal Junction (6.3), Artery - Tibial (5.2), Esophagus - Muscularis (4.9), Colon - Sigmoid (4.5), Artery - Coronary (4.4), and Artery - Aorta (4.1).

SOURCE GeneReport for Unigene cluster for MIR143HG Gene Hs.744892

genes like me logo Genes that share expressions with MIR143HG: view

Orthologs for MIR143HG Gene

Evolution for MIR143HG Gene

ENSEMBL:
Gene Tree for MIR143HG (if available)
TreeFam:
Gene Tree for MIR143HG (if available)

No data available for Orthologs for MIR143HG Gene

Paralogs for MIR143HG Gene

No data available for Paralogs for MIR143HG Gene

Variants for MIR143HG Gene

Sequence variations from dbSNP and Humsavar for MIR143HG Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs241282 -- 149,410,679(+) ATCAA(A/G)TTTAT intron-variant
rs353283 -- 149,415,609(+) CTCCA(A/G)GAGAT intron-variant
rs353284 -- 149,414,412(+) CAGAA(A/G)AGGTT intron-variant
rs353285 -- 149,413,630(+) AGGGG(C/T)AGGAA intron-variant
rs353286 -- 149,413,198(+) GGGAA(A/C)ATCTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MIR143HG Gene

Variant ID Type Subtype PubMed ID
nsv521406 CNV Loss 19592680
nsv528923 CNV Loss 19592680
nsv519878 CNV Loss 19592680
nsv516607 CNV Loss 19592680
esv2668220 CNV Deletion 23128226

Relevant External Links for MIR143HG Gene

HapMap Linkage Disequilibrium report
MIR143HG

Disorders for MIR143HG Gene

No disorders were found for MIR143HG Gene.

No data available for UniProtKB/Swiss-Prot for MIR143HG Gene

Publications for MIR143HG Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  2. miR-145 participates with TP53 in a death-promoting regulatory loop and targets estrogen receptor-alpha in human breast cancer cells. (PMID: 19730444) Spizzo R. … Calin G.A. (Cell Death Differ. 2010) 3
  3. Repression of the miR-143/145 cluster by oncogenic Ras initiates a tumor-promoting feed-forward pathway. (PMID: 21159816) Kent O.A. … Mendell J.T. (Genes Dev. 2010) 3

Products for MIR143HG Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate MIR143HG
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for MIR143HG
    • Block miRNA regulation of MIR143HG using miScript Target Protectors

    Sources for MIR143HG Gene

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