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Aliases for MIR143 Gene

Subcategory (RNA class) for MIR143 Gene

miRNA

Quality Score for this RNA gene is

13

Aliases for MIR143 Gene

  • MicroRNA 143 2 3
  • Cardiac Mesoderm Enhancer-Associated Non-Coding RNA 5
  • Hsa-Mir-143 3
  • Mir-143 3
  • MIRN143 3
  • CARMN 5

External Ids for MIR143 Gene

Previous HGNC Symbols for MIR143 Gene

  • MIRN143

Previous GeneCards Identifiers for MIR143 Gene

  • GC05P148793
  • GC05P148808
  • GC05P149429

Summaries for MIR143 Gene

Entrez Gene Summary for MIR143 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR143 Gene

MIR143 (MicroRNA 143) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are MicroRNAs in cancer.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR143 Gene

Genomics for MIR143 Gene

Regulatory Elements for MIR143 Gene

Enhancers for MIR143 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F149438 2.1 VISTA FANTOM5 Ensembl ENCODE 11.3 +41.3 41322 19.4 CREB3L1 MLX ZFP64 DMAP1 YBX1 YY1 SLC30A9 ZNF143 MCM3 SP3 HMGXB3 TIGD6 ENSG00000248696 PCYOX1L LOC644762 RPS20P4 MIR143 CARMN IL17B RPL7P1
GH05F149495 1.9 Ensembl ENCODE 10.5 +90.6 90588 4.1 ZNF362 ZNF664 ZNF316 POLR2A SCRT2 ZNF512 FOS MAFK EMSY PRDM1 ARHGEF37 MIR145 RPL29P14 CSNK1A1 MIR143 RNU6-588P CARMN IL17B PCYOX1L ENSG00000230551
GH05F149319 1.6 FANTOM5 Ensembl ENCODE 11.2 -84.1 -84091 6.6 PKNOX1 ARNT CREB3L1 MLX ZFP64 ARID4B DMAP1 YY1 CBX5 FOS PCYOX1L GRPEL2 LOC105378223 GRPEL2-AS1 MIR145 AFAP1L1 MIR143 CARMN IL17B RNU6-588P
GH05F149481 1.6 FANTOM5 Ensembl ENCODE 10.8 +79.9 79880 9.5 ATF1 PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF121 GATA2 ZNF416 ARHGEF37 HMGXB3 TIGD6 MIR145 RPL29P14 CSNK1A1 CARMN MIR143 IL17B RNU6-588P
GH05F149517 1.5 Ensembl 10.4 +111.1 111091 0.5 SCRT2 RAD21 MAFK RPL29P14 CSNK1A1 ARHGEF37 MIR143 CARMN IL17B ENSG00000230551 GC05M149546
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR143 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR143 Gene

Chromosome:
5
Start:
149,406,689 bp from pter
End:
149,432,835 bp from pter
Size:
26,147 bases
Orientation:
Plus strand

Genomic View for MIR143 Gene

Genes around MIR143 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR143 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR143 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR143 Gene

Proteins for MIR143 Gene

Post-translational modifications for MIR143 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR143 Gene

Domains & Families for MIR143 Gene

Gene Families for MIR143 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR143: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR143 Gene

Function for MIR143 Gene

Animal Model Products

miRNA for MIR143 Gene

miRTarBase miRNAs that target MIR143

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MIR143 Gene

Localization for MIR143 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR143 Gene

Pathways & Interactions for MIR143 Gene

SuperPathways for MIR143 Gene

SuperPathway Contained pathways
1 MicroRNAs in cancer
genes like me logo Genes that share pathways with MIR143: view

Pathways by source for MIR143 Gene

1 KEGG pathway for MIR143 Gene

Interacting Proteins for MIR143 Gene

Gene Ontology (GO) - Biological Process for MIR143 Gene

None

No data available for SIGNOR curated interactions for MIR143 Gene

Transcripts for MIR143 Gene

mRNA/cDNA for MIR143 Gene

(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR143 Gene

No ASD Table

Relevant External Links for MIR143 Gene

GeneLoc Exon Structure for
MIR143
ECgene alternative splicing isoforms for
MIR143

Expression for MIR143 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR143 Gene

mRNA differential expression in normal tissues according to GTEx for MIR143 Gene

This gene is overexpressed in Esophagus - Gastroesophageal Junction (x11.0), Esophagus - Muscularis (x8.3), and Artery - Coronary (x5.3).

NURSA nuclear receptor signaling pathways regulating expression of MIR143 Gene:

MIR143
genes like me logo Genes that share expression patterns with MIR143: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR143 Gene

Orthologs for MIR143 Gene

Evolution for MIR143 Gene

ENSEMBL:
Gene Tree for MIR143 (if available)
TreeFam:
Gene Tree for MIR143 (if available)

No data available for Orthologs for MIR143 Gene

Paralogs for MIR143 Gene

No data available for Paralogs for MIR143 Gene

Variants for MIR143 Gene

Sequence variations from dbSNP and Humsavar for MIR143 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs112274740 -- 149,428,700(+) TAAGC(G/T)GTTCT intron-variant, upstream-variant-2KB
rs1141225 -- 149,428,712(+) GACaa(A/G)aaaag intron-variant, upstream-variant-2KB
rs114213994 -- 149,429,146(+) AAGTT(C/T)CCCTG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs115606965 -- 149,428,837(+) AGCTG(A/G)AGAGG intron-variant, upstream-variant-2KB
rs115653996 -- 149,427,649(+) AAAGA(A/G)GGCAC intron-variant, upstream-variant-2KB

Relevant External Links for MIR143 Gene

Human Gene Mutation Database (HGMD)
MIR143
SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR143

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR143 Gene

Disorders for MIR143 Gene

Relevant External Links for MIR143

Genetic Association Database (GAD)
MIR143
Human Genome Epidemiology (HuGE) Navigator
MIR143
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR143

No disorders were found for MIR143 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR143 Gene

Publications for MIR143 Gene

  1. Novel genetic variants in miR-191 gene and familial ovarian cancer. (PMID: 20167074) Shen J. … Zhao H. (BMC Cancer 2010) 3 46 64
  2. A regulatory circuit involving miR-143 and DNMT3a mediates vascular smooth muscle cell proliferation induced by homocysteine. (PMID: 26573388) Zhang H.P. … Jiang Y.D. (Mol Med Rep 2016) 3 64
  3. Alteration of the Metabolome Profile in Endothelial Cells by Overexpression of miR-143/145. (PMID: 26597530) Wang W. … Liu C. (J. Microbiol. Biotechnol. 2016) 3 64
  4. Signature miRNAs in colorectal cancers were revealed using a bias reduction small RNA deep sequencing protocol. (PMID: 26646696) Sun G. … Yen Y. (Oncotarget 2016) 3 64
  5. RBM3 regulates temperature sensitive miR-142-5p and miR-143 (thermomiRs), which target immune genes and control fever. (PMID: 26825461) Wong J.J. … Ritchie W. (Nucleic Acids Res. 2016) 3 64

Products for MIR143 Gene

Sources for MIR143 Gene

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