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MIR141 Gene

RNA gene   GIFtS: 23
GCID: GC12P007073

MicroRNA 141


(Previous symbol: MIRN141)
  See MIR141-related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Subcategory (RNA class): miRNA

Quality score for this RNA gene is 3

Aliases
MicroRNA 1411 2
MIRN1411 2 5
mir-1419

External Ids:    HGNC: 315281   Entrez Gene: 4069332   Ensembl: ENSG000002077087   OMIM: 6120935   
ORGUL members:    fRNAdb10:FR368700 FR151905 FR141687      

Export aliases for MIR141 gene to outside databases

Previous GC identifers: GC12P006972 GC12P006976


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MIR141 Gene:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of
gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are
transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can
be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme
to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the
cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The
mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through
imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of
the target mRNA. The RefSeq represents the predicted microRNA stem-loop. (provided by RefSeq, Sep 2009)

GeneCards Summary for MIR141 Gene:
MIR141 (microRNA 141) is an RNA gene, and is affiliated with the miRNA class. Diseases associated with MIR141 include esophageal squamous cell carcinoma.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for MIR141
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MIR141


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12p13.31   Ensembl cytogenetic band:  12p13.31   HGNC cytogenetic band: 12p13.31

MIR141 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIR141 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12P007073:  view genomic region (via miRBase)     (about GC identifiers)

Start:
7,073,260 bp from pter      End:
7,073,354 bp from pter
Size:
95 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
MIR: ncRNAs / Micro RNAs

  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:
   genOway: Develop your customized and physiologically relevant rodent model for MIR141

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for MIR141 About    
See pathways by source

SuperPathContained pathways About
1MicroRNAs in cancer
MicroRNAs in cancer


Find genes that share SuperPaths with MIR141           About GenesLikeMe

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways



1 Kegg Pathway  (Kegg details for MIR141):
    MicroRNAs in cancer

    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MIR141
Interactions:

    Search GeneGlobe Interaction Network for MIR141

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for MIR141



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000384975(miRNA)
miRNA
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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Expression evidence for MIR141:none

See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --

MIR141 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
    Custom PCR Arrays for MIR141
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for MIR141 gene from Selected species (see all 10)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chicken
(Gallus gallus)
Aves gga-mir-200a6
gga-mir-200a
60(a)
1 ↔ 1
21(2597927-2598013) ENSGALG00000018294
lizard
(Anolis carolinensis)
Reptilia aca-mir-200a6
aca-mir-200a
63(a)
1 ↔ 1
GL343647.1(276647-276734)
zebrafish
(Danio rerio)
Actinopterygii dre-mir-200a6
dre-mir-1416
dre-mir-141
63(a)
60(a)
1 ↔ many
1 ↔ many
23(24359043-24359128)
6(40586867-40586949)
        Species with no ortholog for MIR141

ENSEMBL Gene Tree for MIR141 (if available)
TreeFam Gene Tree for MIR141 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MIR141 (see all 12)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 12 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1418783801,2
C--7073440(+) GGGGG-/ACGAAT 1 -- ds50010--------
rs1826400451,2
--7073441(+) GGGGAC/TGAATC 1 -- ds50010--------
rs1869580661,2
C--7073548(+) CTTCCC/TGCCTT 1 -- ds50010--------
rs1125165571,2
C,F--7073558(+) TGGGAG/ACATGA 1 -- ds50011Minor allele frequency- A:0.50CSA 2
rs1931980401,2
--7073616(+) CTTGAC/TCTGTC 1 -- ds50010--------
rs1851690341,2
--7073674(+) TGGGGA/CTGCGA 1 -- ds50010--------
rs1417541711,2
--7073738(+) AAATCA/GAAGCA 1 -- ds50010--------
rs1158917781,2
F--7073753(+) AACCCA/GGTCCC 1 -- ds50011Minor allele frequency- G:0.03WA 118
rs169330111,2
C,F,H--7073805(+) TCCTGG/TACATA 1 -- ds500123Minor allele frequency- T:0.21NA NS EA WA CSA 2482
rs1458434711,2
--7073810(+) GACATA/TCTTTG 1 -- ds50010--------

HapMap Linkage Disequilibrium report for MIR141 (7073260 - 7073354 bp)

Structural Variations
     Database of Genomic Variants (DGV) 2 variations for MIR141:    About this table    
Variant IDTypeSubtypePubMed ID
nsv509453CNV Insertion20534489
nsv898641CNV Loss21882294

Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing MIR141
DNA2.0 Custom Variant and Variant Library Synthesis for MIR141

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 612093    OMIM disorders: --

1 disease for MIR141:    
About MalaCards
esophageal squamous cell carcinoma


Find genes that share disorders with MIR141           About GenesLikeMe


Export disorders for MIR141 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MIR141 gene, integrated from 10 sources (see all 28):
(articles sorted by number of sources associating them with MIR141)
    Utopia: connect your pdf to the dynamic
world of online information

  1. miR-141 contributes to fetal growth restriction by regulating PLAG1 expression. (PubMed id 23554918)1 Tang Q....Xu Q. (PLoS ONE 2013)
  2. An elevated serum miR-141 level in patients with bone-metastatic prostate cancer is correlated with more bone lesions. (PubMed id 23377530)1 Zhang H.L....Ye D.W. (Asian J. Androl. 2013)
  3. Effect of avian influenza A H5N1 infection on the expression of microRNA-141 in human respiratory epithelial cells. (PubMed id 23663545)1 Lam W.Y....Chan P.K. (BMC Microbiol. 2013)
  4. Genome-wide microRNA expression profiling in idiopathic non-obstructive azoospermia: significant up-regulation of miR-141, miR-429 and miR-7-1-3p. (PubMed id 23559187)1 Wu W....Wang X. (Hum. Reprod. 2013)
  5. miR-141 regulates KEAP1 and modulates cisplatin sensitivity in ovarian cancer cells. (PubMed id 23045278)1 van Jaarsveld M.T....Wiemer E.A. (Oncogene 2013)
  6. The cyclin-dependent kinase inhibitor p16INK4a physically interacts with transcription factor Sp1 and cyclin-dependent kinase 4 to transactivate microRNA-141 and microRNA-146b-5p spontaneously and in response to ultraviolet light-induced DNA damage. (PubMed id 24163379)1 Al-Khalaf H.H....Aboussekhra A. (J. Biol. Chem. 2013)
  7. Cooperation of p300 and PCAF in the control of microRNA 200c/141 transcription and epithelial characteristics. (PubMed id 22384255)1 Mizuguchi Y....Demetris A.J. (PLoS ONE 2012)
  8. miR-141 modulates androgen receptor transcriptional activity in human prostate cancer cells through targeting the small heterodimer partner protein. (PubMed id 22314666)1 Xiao J....Chen X.M. (Prostate 2012)
  9. MicroRNA-141 represses HBV replication by targeting PPARA. (PubMed id 22479552)1 Hu W....Wang S. (PLoS ONE 2012)
  10. Enterovirus-induced miR-141 contributes to shutoff of host protein translation by targeting the translation initiation factor eIF4E. (PubMed id 21238947)1 Ho B.C....Yang P.C. (amp 2011)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 406933 HGNC: 31528 Ensembl:ENSG00000207708 miRBase: hsa-mir-141 euGenes: HUgn406933
ECgene: MIR141 Kegg: 406933 H-InvDB: MIR141

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MIR141 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MIR141 gene:
Search GeneIP for patents involving MIR141

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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