MIR133A1 Gene
RNA gene GIFtS: 20
GCID: GC18M019405
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microRNA 133a-1
(Previous symbol: MIRN133A1)
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Aliases
for MIR133A1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
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Subcategory (RNA class): lncRNA
Quality score for this RNA gene is 3
| Aliases |
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| MicroRNA 133a-11 2 | | MIRN133A11 2 | | Hsa-Mir-133a-11 | | Mir-133a-11 |
| External Ids: | HGNC: 315171 | Entrez Gene: 4069222 | Ensembl: ENSG000002077867 | OMIM: 6102545 | | ORGUL members: | |
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| NONCODE:n339807 | |
Export aliases for MIR133A1 gene to outside databasesPrevious GC identifer: GC18M017666
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Summaries
for MIR133A1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
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Entrez Gene summary for MIR133A1:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of geneexpression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribedby RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be eitherprotein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce anapproximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicerribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporatedinto a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with themiRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeqrepresents the predicted microRNA stem-loop. (provided by RefSeq, Sep 2009)
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Genomic Views
for MIR133A1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for MIR133A1
Other transcription factors
Search SABiosciences Chromatin IP Primers for MIR133A1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MIR133A1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 18q11.2 Ensembl cytogenetic band: 18q11.2 HGNC cytogenetic band: 18q11.2MIR133A1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 18 GeneLoc Exon Structure GeneLoc location for GC18M019405: view genomic region (via miRBase)
(about GC identifiers)
Start:
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19,405,659 bp from pter |
End:
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19,405,746 bp from pter |
Size:
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88 bases |
Orientation:
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minus strand |
1 alternative location:
| Chr18- 19,405,448-19,411,371 |
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Proteins
for MIR133A1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
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UniProtKB: --
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Protein
Domains /
Families
for MIR133A1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
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Function
for MIR133A1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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Pathways & Interactions
for MIR133A1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MIR133A1
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Drugs & Compounds
for MIR133A1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
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 Browse Tocris compounds for MIR133A1
Search CenterWatch for drugs/clinical trials and news about MIR133A1 
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Transcripts
for MIR133A1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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1 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000385052(miRNA)
GeneLoc Exon Structure
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Expression
for MIR133A1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| Expression evidence for MIR133A1:none
MIR133A1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image SABiosciences Custom PCR Arrays for MIR133A1
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat MIR133A1 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat MIR133A1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat MIR133A1 |
Orthologs
for MIR133A1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for MIR133A1 (if available)
TreeFam Gene Tree for MIR133A1 (if available) |
Paralogs
for MIR133A1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for MIR133A1 gene
- MIR133B2 MIR133A22
MIR133A1 for paralogs About GeneDecksing
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Genomic Variants
for MIR133A1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
| | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for MIR133A1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
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MIR133A1 for disorders About GeneDecksing
OMIM gene information: 610254
OMIM disorders: --
4  diseases for MIR133A1: About MalaCardsesophageal squamous cell carcinoma squamous cell carcinoma esophagitis carcinoma
Human Genome Epidemiology (HuGE) Navigator: MIR133A1 (1 document)
Export disorders for MIR133A1 gene to outside databases
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Publications
for MIR133A1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed articles for MIR133A1 gene, integrated from 9 sources (see all 16):
(articles sorted by number of sources associating them with MIR133A1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Tumor suppressive microRNA-133a regulates novel target s: moesin contributes to cancer cell proliferation and invasion in head and neck squamous cell carcinoma. (PubMed id 22266319)1 Kinoshita T....Seki N. (2012)
- Functional role of LASP1 in cell viability and its reg ulation by microRNAs in bladder cancer. (PubMed id 20843712)1 Chiyomaru T....Nakagawa M. (2012)
- microRNA-1/133a and microRNA-206/133b clusters: dysreg ulation and functional roles in human cancers. (PubMed id 22308266)1 Nohata N....Seki N. (2012)
- Circulating microRNAs as novel and sensitive biomarker s of acute myocardial Infarction. (PubMed id 22713968)1 Li C....Zeng C. (2012)
- Actin-related protein 2/3 complex subunit 5 (ARPC5) co ntributes to cell migration and invasion and is directly regulated by tumor-supp ressive microRNA-133a in head and neck squamous cell carcinoma. (PubMed id 22378351)1 Kinoshita T....Seki N. (2012)
- microRNA-133 inhibits cell proliferation, migration an d invasion in prostate cancer cells by targeting the epidermal growth factor rec eptor. (PubMed id 22407299)1 Tao J....Zhang W. (2012)
- Increased microRNA-1 and microRNA-133a levels in seru m of patients with cardiovascular disease indicate myocardial damage. (PubMed id 21642241)1 Kuwabara Y....Kimura T. (2011)
- Expression of miR-1, miR-133a, miR-133b and miR-206 i ncreases during development of human skeletal muscle. (PubMed id 21645416)1 Koutsoulidou A....Phylactou L.A. (2011)
- miR-145, miR-133a and miR-133b: Tumor-suppressive miR NAs target FSCN1 in esophageal squamous cell carcinoma. (PubMed id 21351259)1 Kano M....Matsubara H. (2010)
- High glucose suppresses human islet insulin biosynthe sis by inducing miR-133a leading to decreased polypyrimidine tract binding prot ein-expression. (PubMed id 20520763)1 Fred R.G....Welsh N. (2010)
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External Searches for MIR133A1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing MIR133A1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
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Other Databases showing MIR133A1 gene
(According to HUGE)
About This Section
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Specialized Databases showing MIR133A1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
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| Name | Description |
| PharmGKB entry for MIR133A1 | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for MIR133A1 gene:
Search GeneIP for patents involving MIR133A1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Products
for MIR133A1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat MIR133A1 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing MIR133A1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MIR133A1 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat MIR133A1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat MIR133A1 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat MIR133A1 |
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 | | | | |  |  |  | | | | Search ThermoFisher Antibodies for MIR133A1 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat MIR133A1 |
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Last full update: 19 Mar 2013 -
Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013
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