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Aliases for MIR1306 Gene

Subcategory (RNA class) for MIR1306 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR1306 Gene

  • MicroRNA 1306 2 3 5
  • Hsa-Mir-1306 3
  • Mir-1306 3
  • MIRN1306 3

External Ids for MIR1306 Gene

Previous HGNC Symbols for MIR1306 Gene

  • MIRN1306

Previous GeneCards Identifiers for MIR1306 Gene

  • GC00U922843
  • GC22P018454
  • GC22P020073

Summaries for MIR1306 Gene

Entrez Gene Summary for MIR1306 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR1306 Gene

MIR1306 (MicroRNA 1306) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are Mitotic Prophase and Gene Expression.

Additional gene information for MIR1306 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR1306 Gene

Genomics for MIR1306 Gene

GeneHancer (GH) Regulatory Elements for MIR1306 Gene

Promoters and enhancers for MIR1306 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I020084 Enhancer 1.2 ENCODE dbSUPER 550.8 -1.1 -1135 1.4 HDGF HNRNPUL1 PKNOX1 SMAD1 ATF1 FOXA2 MLX ARNT ARID4B SIN3A MIR1306 MIR3618 DGCR8 TRMT2A LZTR1 MED15 LINC01311 LOC100420177 RPL7AP70 UFD1
GH22I020093 Enhancer 0.7 ENCODE 0.4 +7.5 7505 0.1 FOXA2 TAF1 MAX RAD21 YY1 POLR2A RXRA REST MNT GABPA MIR1306 DGCR8 ENSG00000243762
GH22I020098 Enhancer 0.7 Ensembl ENCODE 0.4 +13.9 13931 2.8 ZNF274 POLR2A MYNN CEBPB ZBTB33 ATF2 SNRNP70 DGCR8 TRMT2A ZDHHC8 RPL8P5 LOC100420177 LZTR1 ENSG00000273300 LINC01311 MIR185 LOC284865
GH22I020105 Enhancer 0.6 ENCODE 0.3 +20.4 20355 2.2 SMAD5 ZNF740 ZNF621 TEAD4 TSC22D4 ZIC2 POLR2A PRDM1 ZBTB17 ZDHHC8 ABHD17AP4 MIR185 CCDC188 ENSG00000243762 MIR1306 DGCR8
GH22I020111 Enhancer 0.5 ENCODE 0.3 +24.6 24635 0.2 POLR2B POLR2A ZBED1 NCOA1 SUPT5H ENSG00000243762 MIR185 TRMT2A MIR1306 DGCR8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR1306 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR1306 Gene

Genomic Locations for MIR1306 Gene
chr22:20,086,058-20,086,142
(GRCh38/hg38)
Size:
85 bases
Orientation:
Plus strand
chr22:20,073,581-20,073,665
(GRCh37/hg19)

Genomic View for MIR1306 Gene

Genes around MIR1306 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR1306 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1306 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1306 Gene

Proteins for MIR1306 Gene

Post-translational modifications for MIR1306 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR1306 Gene

Domains & Families for MIR1306 Gene

Gene Families for MIR1306 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR1306: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1306 Gene

Function for MIR1306 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1306 Gene

Localization for MIR1306 Gene

Gene Ontology (GO) - Cellular Components for MIR1306 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 26646931
genes like me logo Genes that share ontologies with MIR1306: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for MIR1306 Gene

Pathways & Interactions for MIR1306 Gene

genes like me logo Genes that share pathways with MIR1306: view

Pathways by source for MIR1306 Gene

Interacting Proteins for MIR1306 Gene

Gene Ontology (GO) - Biological Process for MIR1306 Gene

None

No data available for SIGNOR curated interactions for MIR1306 Gene

Drugs & Compounds for MIR1306 Gene

No Compound Related Data Available

Transcripts for MIR1306 Gene

mRNA/cDNA for MIR1306 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1306 Gene

No ASD Table

Relevant External Links for MIR1306 Gene

GeneLoc Exon Structure for
MIR1306
ECgene alternative splicing isoforms for
MIR1306

Expression for MIR1306 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR1306 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR1306 Gene:

MIR1306
genes like me logo Genes that share expression patterns with MIR1306: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR1306 Gene

Orthologs for MIR1306 Gene

Evolution for MIR1306 Gene

ENSEMBL:
Gene Tree for MIR1306 (if available)
TreeFam:
Gene Tree for MIR1306 (if available)

No data available for Orthologs for MIR1306 Gene

Paralogs for MIR1306 Gene

No data available for Paralogs for MIR1306 Gene

Variants for MIR1306 Gene

Sequence variations from dbSNP and Humsavar for MIR1306 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000392251 -- 20,084,581(+) A/T upstream_transcript_variant
rs1003220379 -- 20,084,469(+) A/G upstream_transcript_variant
rs1004168121 -- 20,085,400(+) A/G upstream_transcript_variant
rs1006072593 -- 20,084,834(+) C/G/T upstream_transcript_variant
rs1006732978 -- 20,084,206(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR1306 Gene

Variant ID Type Subtype PubMed ID
dgv4480n100 CNV gain 25217958
dgv726n67 CNV gain 20364138
dgv7983n54 CNV gain 21841781
esv2758825 CNV loss 17122850
esv3647284 CNV gain 21293372
esv3893434 CNV gain 25118596
nsv471183 CNV loss 18288195
nsv828938 CNV gain 20364138
nsv828939 CNV loss 20364138
nsv834133 CNV loss 17160897
nsv953027 CNV deletion 24416366

Additional Variant Information for MIR1306 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR1306

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR1306 Gene

Disorders for MIR1306 Gene

Additional Disease Information for MIR1306

No disorders were found for MIR1306 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1306 Gene

Publications for MIR1306 Gene

  1. Association of MicroRNAs and YRNAs With Platelet Function. (PMID: 26646931) Kaudewitz D … Mayr M (Circulation research 2016) 3 58
  2. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
  3. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin RD … Marra MA (Genome research 2008) 3 58
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR1306 Gene

Sources for MIR1306 Gene

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