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Aliases for MIR1306 Gene

Subcategory (RNA class) for MIR1306 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR1306 Gene

  • MicroRNA 1306 2 3 5
  • Hsa-Mir-1306 3
  • Mir-1306 3
  • MIRN1306 3

External Ids for MIR1306 Gene

Previous HGNC Symbols for MIR1306 Gene

  • MIRN1306

Previous GeneCards Identifiers for MIR1306 Gene

  • GC00U922843
  • GC22P018454
  • GC22P020073

Summaries for MIR1306 Gene

Entrez Gene Summary for MIR1306 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR1306 Gene

MIR1306 (MicroRNA 1306) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are mRNA Capping and Gene Expression.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR1306 Gene

Genomics for MIR1306 Gene

Regulatory Elements for MIR1306 Gene

Enhancers for MIR1306 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G020093 0.9 ENCODE 0.4 +7.5 7505 0.1 HDGF ATF1 SIN3A ARID4B YY1 ZNF263 SREBF1 HNF4A WT1 SP7 ABHD17AP4 MIR1306 ENSG00000243762
GH22G020098 0.9 Ensembl ENCODE 0.4 +13.9 13932 2.8 HDAC1 CEBPB TSC22D4 RBBP5 ATF2 SREBF1 ZNF274 POLR2A MYNN ID3 ZDHHC8 ABHD17AP4 MIR185 LOC284865 ENSG00000243762 MIR1306
GH22G020105 0.8 ENCODE 0.3 +20.4 20355 2.2 CTCF HDAC1 HDAC6 TBL1XR1 TAF1 SAP30 TSC22D4 MAX ZIC2 RAD21 ZDHHC8 ABHD17AP4 MIR185 CCDC188 ENSG00000243762 MIR1306
GH22G020111 0.5 ENCODE 0.3 +24.6 24635 0.2 POLR2A AGO1 ZBED1 RBFOX2 SUPT5H MIR185 TRMT2A ENSG00000243762 MIR1306
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR1306 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR1306 Gene

Chromosome:
22
Start:
20,086,058 bp from pter
End:
20,086,142 bp from pter
Size:
85 bases
Orientation:
Plus strand

Genomic View for MIR1306 Gene

Genes around MIR1306 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR1306 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1306 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1306 Gene

Proteins for MIR1306 Gene

Post-translational modifications for MIR1306 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR1306 Gene

Domains & Families for MIR1306 Gene

Gene Families for MIR1306 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR1306: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1306 Gene

Function for MIR1306 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1306 Gene

Localization for MIR1306 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR1306 Gene

Pathways & Interactions for MIR1306 Gene

genes like me logo Genes that share pathways with MIR1306: view

Pathways by source for MIR1306 Gene

Interacting Proteins for MIR1306 Gene

Gene Ontology (GO) - Biological Process for MIR1306 Gene

None

No data available for SIGNOR curated interactions for MIR1306 Gene

Drugs & Compounds for MIR1306 Gene

No Compound Related Data Available

Transcripts for MIR1306 Gene

mRNA/cDNA for MIR1306 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1306 Gene

No ASD Table

Relevant External Links for MIR1306 Gene

GeneLoc Exon Structure for
MIR1306
ECgene alternative splicing isoforms for
MIR1306

Expression for MIR1306 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR1306 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR1306 Gene:

MIR1306
genes like me logo Genes that share expression patterns with MIR1306: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR1306 Gene

Orthologs for MIR1306 Gene

Evolution for MIR1306 Gene

ENSEMBL:
Gene Tree for MIR1306 (if available)
TreeFam:
Gene Tree for MIR1306 (if available)

No data available for Orthologs for MIR1306 Gene

Paralogs for MIR1306 Gene

No data available for Paralogs for MIR1306 Gene

Variants for MIR1306 Gene

Sequence variations from dbSNP and Humsavar for MIR1306 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000392251 -- 20,084,581(+) TCCGT(A/T)TCTGG intron-variant, upstream-variant-2KB
rs1003220379 -- 20,084,469(+) TCTTC(A/G)TGCTT intron-variant, upstream-variant-2KB
rs1004168121 -- 20,085,400(+) AGTGT(A/G)AATTT intron-variant, upstream-variant-2KB
rs1006072593 -- 20,084,834(+) GTCCC(C/T)GTGCC intron-variant, upstream-variant-2KB
rs1006732978 -- 20,084,206(+) CATCC(A/G)CCATG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR1306 Gene

Variant ID Type Subtype PubMed ID
dgv4480n100 CNV gain 25217958
dgv726n67 CNV gain 20364138
dgv7983n54 CNV gain 21841781
esv2758825 CNV loss 17122850
esv3647284 CNV gain 21293372
esv3893434 CNV gain 25118596
nsv471183 CNV loss 18288195
nsv828938 CNV gain 20364138
nsv828939 CNV loss 20364138
nsv834133 CNV loss 17160897
nsv953027 CNV deletion 24416366

Relevant External Links for MIR1306 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR1306

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR1306 Gene

Disorders for MIR1306 Gene

Relevant External Links for MIR1306

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR1306

No disorders were found for MIR1306 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1306 Gene

Publications for MIR1306 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin R.D. … Marra M.A. (Genome Res. 2008) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR1306 Gene

Sources for MIR1306 Gene

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