Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR1302-5 Gene

Subcategory (RNA class) for MIR1302-5 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR1302-5 Gene

  • MicroRNA 1302-5 2 3 5
  • Hsa-Mir-1302-5 3
  • MIRN1302-5 3

External Ids for MIR1302-5 Gene

Previous HGNC Symbols for MIR1302-5 Gene

  • MIRN1302-5

Previous GeneCards Identifiers for MIR1302-5 Gene

  • GC00U923086
  • GC20M048665
  • GC20M049231

Summaries for MIR1302-5 Gene

Entrez Gene Summary for MIR1302-5 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR1302-5 Gene

MIR1302-5 (MicroRNA 1302-5) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR1302-5 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR1302-5 Gene

Genomics for MIR1302-5 Gene

GeneHancer (GH) Regulatory Elements for MIR1302-5 Gene

Promoters and enhancers for MIR1302-5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I050641 Enhancer 1.5 Ensembl ENCODE dbSUPER 13 -29.7 -29719 6.2 HDGF PKNOX1 CLOCK FOXA2 MLX ARID4B NEUROD1 SIN3A DMAP1 ZBTB7B LOC100506175 ADNP DPM1 RNF114 MOCS3 RPL36P2 MIR1302-5 ENSG00000232043 RIPOR3 PSMD10P1
GH20I050496 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +116.8 116815 3.7 ATF1 ZBTB40 BATF ETS1 ZNF335 ELK1 ZNF143 FOS ATF7 IKZF2 ENSG00000232043 PTPN1 CEBPB MIR645 MIR1302-5 RPL36P2 LOC101927512 PARD6B TMEM189 GC20P050480
GH20I050658 Enhancer 1.4 Ensembl ENCODE dbSUPER 11.9 -46.8 -46826 6.5 HDGF PKNOX1 FOXA2 ARID4B NEUROD1 SIN3A ZBTB7B ZNF48 YY1 ELK1 ENSG00000232043 ADNP RIPOR3 DPM1 RPL36P2 MIR1302-5 MIR645 PSMD10P1 BCAS4 LOC105372659
GH20I050492 Enhancer 1 ENCODE dbSUPER 10.7 +121.4 121375 2.4 PKNOX1 BATF ZNF121 POLR3A RCOR1 FOS RUNX3 CEBPB JUNB ZNF217 ENSG00000232043 MIR645 RPL36P2 MIR1302-5 PSMD10P1 GC20P050480 PTPN1
GH20I050666 Enhancer 0.7 FANTOM5 dbSUPER 11.9 -51.6 -51619 0.2 SMARCA5 SCRT1 HDGF FOXA2 ZNF512 SCRT2 LOC105372659 RIPOR3 RPL36P2 MIR1302-5 MIR645 ENSG00000232043 BCAS4 LOC100506175
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR1302-5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR1302-5 Gene

Genomic Locations for MIR1302-5 Gene
chr20:50,614,636-50,614,785
(GRCh38/hg38)
Size:
150 bases
Orientation:
Minus strand
chr20:49,231,173-49,231,322
(GRCh37/hg19)

Genomic View for MIR1302-5 Gene

Genes around MIR1302-5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR1302-5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1302-5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1302-5 Gene

ORGUL Member Location for MIR1302-5 Gene

ORGUL Member Location for MIR1302-5 gene

Proteins for MIR1302-5 Gene

Post-translational modifications for MIR1302-5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR1302-5 Gene

Domains & Families for MIR1302-5 Gene

Gene Families for MIR1302-5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR1302-5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1302-5 Gene

Function for MIR1302-5 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1302-5 Gene

Localization for MIR1302-5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR1302-5 Gene

Pathways & Interactions for MIR1302-5 Gene

SuperPathways for MIR1302-5 Gene

No Data Available

Interacting Proteins for MIR1302-5 Gene

Gene Ontology (GO) - Biological Process for MIR1302-5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR1302-5 Gene

Drugs & Compounds for MIR1302-5 Gene

No Compound Related Data Available

Transcripts for MIR1302-5 Gene

mRNA/cDNA for MIR1302-5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1302-5 Gene

No ASD Table

Relevant External Links for MIR1302-5 Gene

GeneLoc Exon Structure for
MIR1302-5
ECgene alternative splicing isoforms for
MIR1302-5

Expression for MIR1302-5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR1302-5 Gene

genes like me logo Genes that share expression patterns with MIR1302-5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR1302-5 Gene

Orthologs for MIR1302-5 Gene

This gene was present in the common ancestor of mammals.

Orthologs for MIR1302-5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 69 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia -- 34
  • 64 (a)
OneToMany
Species where no ortholog for MIR1302-5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR1302-5 Gene

ENSEMBL:
Gene Tree for MIR1302-5 (if available)
TreeFam:
Gene Tree for MIR1302-5 (if available)

Paralogs for MIR1302-5 Gene

No data available for Paralogs for MIR1302-5 Gene

Variants for MIR1302-5 Gene

Sequence variations from dbSNP and Humsavar for MIR1302-5 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000077916 -- 50,614,377(-) G/A downstream_transcript_variant
rs1002058713 -- 50,615,768(-) C/T upstream_transcript_variant
rs1005737267 -- 50,616,430(-) C/T upstream_transcript_variant
rs1006037258 -- 50,616,049(-) C/G upstream_transcript_variant
rs1006840686 -- 50,614,612(-) G/C downstream_transcript_variant

Additional Variant Information for MIR1302-5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR1302-5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR1302-5 Gene

Disorders for MIR1302-5 Gene

Additional Disease Information for MIR1302-5

No disorders were found for MIR1302-5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1302-5 Gene

Publications for MIR1302-5 Gene

  1. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin RD … Marra MA (Genome research 2008) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR1302-5 Gene

Sources for MIR1302-5 Gene

Content
Loading form....